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Finalize pathway analyses text, including introductory paragraphs #349
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Here's the outline I'm thinking:
Unfortunately the |
Here's a general draft. If it looks decent, I will file a PR for the more detailed feedback. About this pathway analysisThis example is one of the pathway analysis module set. <-- Example specific explanation --> What is pathway analysis?We refer to any technique that uses predetermined sets of genes that are related or coordinated in their expression in some way (e.g., participate in the same molecular process, are regulated by the same transcription factor) to interpret a high-throughput experiment as pathway analysis. We highly recommend taking a look at Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges from Khatri et al. for a more comprehensive overview and reading the primary publications and documentation of the methods and sources we will introduce below. How to choose a pathway analysis?This table summarizes the pathway analyses examples in this module.
@jaclyn-taroni edit to remove inadvertent tag. |
Apparently |
Background
Based on implementing option 2: #340 (comment), we need to draft up a paragraph with the essential info of how someone decides which pathway analysis they should use.
Problem
Currently the pathway analyses don't have background info about how to choose a pathway analysis based on your question and dataset. The original plan was to have an intro doc, but we discussed it on #340 and each pathway analysis will have its own brief intro info paragraph.
What are the recommended next steps?
The info will include the same kinds of concepts as are covered in the training slides but of course tailored for a self-teaching context as well as being more brief: https://docs.google.com/presentation/d/1WPuuN6KviEswaWVU0yBRe4XvFjPE0mT3Epd1Xr6TjMQ/edit#slide=id.p
Basically give the users guidance about which analysis they will want to use based on their questions and dataset's contents and link out to those other pathway analyses.
Is there a particular timeframe for this issue?
Before going live probably.
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