Implement emulator support and vecorization for the likelihood Likelihood1DPowerLightCone #194
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| name: Tests | |
| # Test on all pushes, except when the push is literally just a tag (because we | |
| # tag automatically via CI, and therefore there's no extra code in that push). | |
| # Also, only test on pull requests into master. | |
| on: | |
| push: | |
| tags-ignore: | |
| - 'v*' | |
| pull_request: | |
| branches: | |
| - 'master' | |
| jobs: | |
| tests: | |
| if: "!contains(github.event.pull_request.labels.*.name, 'auto-pr')" | |
| env: | |
| ENV_NAME: tests | |
| PYTHON: ${{ matrix.python-version }} | |
| OS: ${{ matrix.os }} | |
| name: Testing | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest] | |
| python-version: [3.8, 3.9, "3.10"] | |
| defaults: | |
| run: | |
| # Adding -l {0} ensures conda can be found properly in each step | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@master | |
| with: | |
| fetch-depth: 0 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| env: | |
| # Increase this value to reset cache if ci/tests.yaml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ matrix.python-version }}-${{ hashFiles('ci/tests.yaml', 'setup.cfg') }} | |
| - name: Setup Miniconda | |
| uses: conda-incubator/[email protected] | |
| with: | |
| # auto-update-conda: true | |
| miniconda-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ci/test-env.yml | |
| activate-environment: tests | |
| channel-priority: strict | |
| use-only-tar-bz2: true | |
| - name: Conda Info | |
| run: | | |
| conda info -a | |
| conda list | |
| PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"` | |
| if [[ $PYVER != $PYTHON ]]; then | |
| exit 1; | |
| fi | |
| # - name: Get C Libraries Linux | |
| # if: matrix.os == 'ubuntu-latest' | |
| # run: | | |
| # sudo apt-get install libfftw3-dev | |
| # sudo apt-get install libgsl0-dev | |
| # - name: Install Dependencies MacOSX | |
| # if: matrix.os == 'macos-latest' | |
| # run: | | |
| # export PATH="$HOME/miniconda/bin:$PATH" | |
| # source activate ${ENV_NAME} | |
| # conda env update -f ci/test-env.yml | |
| # CC=gcc CFLAGS="-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk" pip install git+https://github.com/21cmFAST/21cmFAST.git | |
| - name: Install 21CMMC | |
| # if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| echo $(which pip) | |
| pip install . | |
| # - name: Install 21CMMC MacOS | |
| # if: matrix.os == 'macos-latest' | |
| # run: | | |
| # export PATH="$HOME/miniconda/bin:$PATH" | |
| # source activate $ENV_NAME | |
| # CC=gcc CFLAGS="-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk" pip install . | |
| - name: List Environment | |
| run: | | |
| conda list | |
| - name: Run Tests | |
| run: | | |
| python -m pytest --cov=py21cmmc --cov-config=.coveragerc -vv --cov-report xml:./coverage.xml --durations=25 | |
| - uses: codecov/codecov-action@v2 | |
| if: matrix.os == 'ubuntu-latest' && success() | |
| with: | |
| file: ./coverage.xml #optional | |
| fail_ci_if_error: true |