test_suite.yaml

name: Tests

# Test on all pushes, except when the push is literally just a tag (because we
# tag automatically via CI, and therefore there's no extra code in that push).
# Also, only test on pull requests into master.
on:
  push:
    tags-ignore:
      - 'v*'
  pull_request:
    branches:
      - 'master'


jobs:
  tests:
    if: "!contains(github.event.pull_request.labels.*.name, 'auto-pr')"
    env:
      ENV_NAME: tests
      PYTHON: ${{ matrix.python-version }}
      OS: ${{ matrix.os }}
    name: Testing
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, macos-latest]
        python-version: [3.8, 3.9, "3.10"]
    defaults:
      run:
        # Adding -l {0} ensures conda can be found properly in each step
        shell: bash -l {0}
    steps:
      - uses: actions/checkout@master
        with:
          fetch-depth: 0

      - name: Cache conda
        uses: actions/cache@v2
        env:
          # Increase this value to reset cache if ci/tests.yaml has not changed
          CACHE_NUMBER: 0
        with:
          path: ~/conda_pkgs_dir
          key:
            ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ matrix.python-version }}-${{ hashFiles('ci/tests.yaml', 'setup.cfg') }}

      - name: Setup Miniconda
        uses: conda-incubator/setup-miniconda@v2.1.1
        with:
          # auto-update-conda: true
          miniconda-version: "latest"
          python-version: ${{ matrix.python-version }}
          environment-file: ci/test-env.yml
          activate-environment: tests
          channel-priority: strict
          use-only-tar-bz2: true

      - name: Conda Info
        run: |
          conda info -a
          conda list
          PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
          if [[ $PYVER != $PYTHON ]]; then
            exit 1;
          fi

      # - name: Get C Libraries Linux
      #   if: matrix.os == 'ubuntu-latest'
      #   run: |
      #     sudo apt-get install libfftw3-dev
      #     sudo apt-get install libgsl0-dev

      # - name: Install Dependencies MacOSX
      #   if: matrix.os == 'macos-latest'
      #   run: |
      #     export PATH="$HOME/miniconda/bin:$PATH"
      #     source activate ${ENV_NAME}
      #     conda env update -f ci/test-env.yml
      #     CC=gcc CFLAGS="-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk" pip install git+https://github.com/21cmFAST/21cmFAST.git

      - name: Install 21CMMC
#        if: matrix.os == 'ubuntu-latest'
        run: |
          echo $(which pip)
          pip install .

      # - name: Install 21CMMC MacOS
      #   if: matrix.os == 'macos-latest'
      #   run: |
      #     export PATH="$HOME/miniconda/bin:$PATH"
      #     source activate $ENV_NAME
      #     CC=gcc CFLAGS="-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk" pip install .
      - name: List Environment
        run: |
          conda list

      - name: Run Tests
        run: |
          python -m pytest --cov=py21cmmc --cov-config=.coveragerc -vv --cov-report xml:./coverage.xml --durations=25

      - uses: codecov/codecov-action@v2
        if: matrix.os == 'ubuntu-latest' && success()
        with:
          file: ./coverage.xml #optional
          fail_ci_if_error: true