Version 4.0.0

New feature

Version 4 of the aggregation code brings the ability to extract and reduce data across major workflow versions. Because of this change the command line interface has been updated with a new way to enter workflow versions:

The old way

Before the minor workflow version was entered as a different flag

panoptes_aggregation config penguin-watch-workflows.csv 6465 -v 52 -m 76

The new way

Now it is entered with the major workflow version under the -v flag

panoptes_aggregation config penguin-watch-workflows.csv 6465 -v 52.76

Specifying a version range

If you want to aggregate across all minor versions of a major workflow version just included the major version in the -v flag

panoptes_aggregation config penguin-watch-workflows.csv 6465 -v 52

If you want to go between specific versions (even between major versions) use the new --min_version and --max_version flags (both flags are inclusive)

panoptes_aggregation config penguin-watch-workflows.csv 6465 --min_version 51.3 --max_version 53.5

New documentation string for panoptes_aggregation config

usage: panoptes_aggregation config [-h] [-d DIR] [-v VERSION]
                                   [--min_version MIN_VERSION]
                                   [--max_version MAX_VERSION] [-k KEYWORDS]
                                   [-vv]
                                   workflow_csv workflow_id
Make configuration files for panoptes data extraction and reduction based on a
workflow export
optional arguments:
  -h, --help            show this help message and exit
Load Workflow Files:
  This file can be exported from a project\'s Data Export tab
  workflow_csv          The csv file containing the workflow data
Workflow ID and version numbers:
  Enter the workflow ID, major version number, and minor version number
  workflow_id           the workflow ID you would like to extract
  -v VERSION, --version VERSION
                        The workflow version to extract. If only a major
                        version is given (e.g. -v 3) all minor versions will
                        be extracted at once. If a minor version is provided
                        (e.g. -v 3.14) only that specific version will be
                        extracted.
  --min_version MIN_VERSION
                        The minimum workflow version to extract (inclusive).
                        This can be provided as either a major version (e.g.
                        --min_version 3) or a major version with a minor
                        version (e.g. --min_version 3.14). If this flag is
                        provided the --version flag will be ignored.
  --max_version MAX_VERSION
                        The maximum workflow version to extract (inclusive).
                        This can be provided as either a major version (e.g.
                        --max_version 3) or a major version with a minor
                        version (e.g. --max_version 3.14). If this flag is
                        provided the --version flag will be ignored.
Other keywords:
  Additional keywords to be passed into the configuration files
  -k KEYWORDS, --keywords KEYWORDS
                        keywords to be passed into the configuration of a task
                        in the form of a json string, e.g. '{"T0":
                        {"dot_freq": "line"} }' (note: double quotes must be
                        used inside the brackets)
Save Config Files:
  The directory to save the configuration files to
  -d DIR, --dir DIR     The directory to save the configuration files to
Other options:
-vv, --verbose increase output verbosity