v1.4.7

1. add -mask to output hard and/or soft masked sequences;
2. add -score option to filter hits;
3. fix some minor bugs.

v1.4.6

1. fixed some bugs
2. new option: -prob to control false positives of HMM
3. new option: --db-hmm to provide a custum HMM database file
4. add LINE/RT HMMs from Kapitonov, et al., 2009

New GENOME mode v1.4

1. new mode: -genome to screen TE domains across genome assembly
2. HMM update: rebuild REXdb HMMs to v3.3; add option --nobias for hmmscan
3. normalized score; use domain score instead of full sequence score
4. multiple CPUs for translating
5. some minor revisions

Update to python3. Packaged to easy install, easy test, upate readme

1. move to python3.
2. fix several bugs.

v1.2.5

fix several bugs.

v1.2.1

Fix some bugs. The results should be identical.

v1.1.3

revised README.

a stable vesion used for benchmarking

fix several bugs.

v1.0

New features:

1. multi-processing.
2. add a pass-2 step to classify unclassified sequences.
3. add usage and some wrappers
4. fix bugs
5. update database

v0.1

fix bug