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zhanglabtools

Dr. Shihua Zhang's laboratory

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  1. DSMO.course DSMO.course Public

    Data Science and Matrix Optimization course

    71 37

  2. STAGATE STAGATE Public

    Forked from QIFEIDKN/STAGATE

    Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics

    Python 65 10

  3. DeepLearningTheory.course DeepLearningTheory.course Public

    Deep Learning Theory course

    19 4

  4. STAligner STAligner Public

    Forked from zhoux85/STAligner

    STAligner: Integrating spatial transcriptomics data across different conditions, technologies, and developmental stages

    Jupyter Notebook 19

  5. BrainAlign BrainAlign Public

    Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"

    Python 10 1

  6. DNADataAugmentation DNADataAugmentation Public

    Source code for paper 'Simple tricks of convolutional neural network architectures improve DNA–protein binding prediction'. In addition, some reusable code is also sort out for further use.

    Python 9 1

Repositories

Showing 10 of 36 repositories
  • TADGATE Public

    TADGATE is a computational tool to identify TADs in Hi-C contact map with a graph attention autoencoder.

    zhanglabtools/TADGATE’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 1 Updated Nov 25, 2024
  • zhanglabtools/DeepLearningTheory.course.2024’s past year of commit activity
    2 4 0 0 Updated Nov 21, 2024
  • Mactop Public Forked from ydduanran/Mactop

    deciphering chromatin domain, domain community and chromunity for 3D genome maps

    zhanglabtools/Mactop’s past year of commit activity
    Jupyter Notebook 1 MIT 3 0 0 Updated Oct 18, 2024
  • STADIA Public Forked from yanfang-li/STADIA
    zhanglabtools/STADIA’s past year of commit activity
    C++ 1 GPL-3.0 2 0 0 Updated Oct 15, 2024
  • zhanglabtools/STAMapper’s past year of commit activity
    Jupyter Notebook 2 MIT 2 0 0 Updated Oct 8, 2024
  • BrainAlign Public

    Code for "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign"

    zhanglabtools/BrainAlign’s past year of commit activity
    Python 10 MIT 1 0 0 Updated Oct 4, 2024
  • STABox Public Forked from Tidebear/STABox

    Interactive analysis and visualization of spatial transcriptome GUI program

    zhanglabtools/STABox’s past year of commit activity
    Jupyter Notebook 0 4 0 1 Updated Jul 29, 2024
  • STAMarker Public Forked from messcode/STAMarker

    STAMarker: Identify Spatial Domain-specific Variable Genes via Ensemble Graph Attention Autoencoders

    zhanglabtools/STAMarker’s past year of commit activity
    Jupyter Notebook 4 4 0 0 Updated Jul 16, 2024
  • STASCAN Public Forked from AbbyWY/STASCAN
    zhanglabtools/STASCAN’s past year of commit activity
    Python 0 MIT 5 0 0 Updated Jul 15, 2024
  • ImputeHiFI Public Forked from remember-past/ImputeHiFI

    ImputeHiFI: An Imputation Method for Multiplexed DNA FISH Data by Utilizing Single-Cell Hi-C and RNA FISH Data

    zhanglabtools/ImputeHiFI’s past year of commit activity
    Jupyter Notebook 2 MIT 2 0 0 Updated Jun 8, 2024

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