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Popular repositories Loading

  1. TEs_genes_relationship_pipeline TEs_genes_relationship_pipeline Public

    Forked from marieBvr/TEs_genes_relationship_pipeline

    Distribution of TEs and their relationship to genes in host genome

    Python

  2. TE_Density TE_Density Public

    Forked from sjteresi/TE_Density

    Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4

    Python

  3. TEtranscripts TEtranscripts Public

    Forked from mhammell-laboratory/TEtranscripts

    A package for including transposable elements in differential enrichment analysis of sequencing datasets.

    Python

  4. STAR STAR Public

    Forked from alexdobin/STAR

    RNA-seq aligner

    C

  5. LTR_HARVEST_parallel LTR_HARVEST_parallel Public

    Forked from oushujun/LTR_HARVEST_parallel

    An accessory script to run LTRharvest in parallel modified by @wild-joker.

    Perl

  6. LTR_retriever LTR_retriever Public

    Forked from oushujun/LTR_retriever

    LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

    Perl