Revert comment, code creates subtitles

zbmed-semtec · Nov 1, 2023 · 10892a1 · 10892a1
1 parent 21d95cd
commit 10892a1
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Showing 6 changed files with 31 additions and 4 deletions.
diff --git a/code/createPage.py b/code/createPage.py
@@ -207,9 +207,6 @@ def generateMDTableFromJSON(jsonData, jsonFileURL):
     jsonData = complexDataInList(jsonData)
     jsonData = createTableLink(jsonData)
 
-    """
-    Why is this loop before another loop on the same collection?
-    Does not seem to modify anything
     for property, value in jsonData.items():
         if property == "name":
             md += f'## {renderProperty(property, value)}\n'
@@ -218,7 +215,7 @@ def generateMDTableFromJSON(jsonData, jsonFileURL):
             md += f'### {renderProperty("Name", value + " " + familyName)}\n'
         if property == "familyName" and "givenName" not in jsonData:
             md += f'### {renderProperty("Name", value)}\n'
-    """
+
     linkValue = jsonData.get("@link", "")
     if linkValue:
         md += f'<p>{createGetJsonLink(jsonFileURL)} | {linkValue}</p>\n'

diff --git a/docs/current_members.md b/docs/current_members.md
@@ -1,5 +1,6 @@
 # Current_members metadata
 
+### Lukas Geist
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\current_members\geist_0000-0002-2910-7982.json" target="_blank"> Get JSON-LD</a> | <a href="http://orcid.org/0000-0002-2910-7982" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -29,6 +30,7 @@
 }
 </script>
 
+### Nelson Quiñones
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\current_members\quinones_0000-0002-5037-0443.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0000-0002-5037-0443" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -58,6 +60,7 @@
 }
 </script>
 
+### Rohitha Ravinder
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\current_members\ravinder_0009-0004-4484-6283.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0009-0004-4484-6283" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -87,6 +90,7 @@
 }
 </script>
 
+### Dhwani Solanki
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\current_members\solanki_0009-0004-1529-0095.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0009-0004-1529-0095" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -116,6 +120,7 @@
 }
 </script>
 
+### Dietrich Rebholz-Schuhmann
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\current_members\z_drs_0000-0002-1018-0370.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0000-0002-1018-0370" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -145,6 +150,7 @@
 }
 </script>
 
+### Leyla Jael Castro
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\current_members\z_ljc_0000-0003-3986-0510.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0000-0003-3986-0510" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>

diff --git a/docs/datasets.md b/docs/datasets.md
@@ -1,5 +1,6 @@
 # Datasets metadata
 
+## Whatizit performance evaluation against CRAFT corpus
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\datasets\20210605_whatizit_against_craft_annotation_performance.json" target="_blank"> Get JSON-LD</a> | <a href="https://doi.org/10.5281/zenodo.4903981" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit DataCatalog</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -190,6 +191,7 @@
 }
 </script>
 
+## Complete Medline abstracts corpus between 2015-2019 annotated Whatizit text annotation tool
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\datasets\20210627_annotated-medline-abstracts-2015-2019.json" target="_blank"> Get JSON-LD</a> | <a href="https://doi.org/10.5281/zenodo.5035290" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit DataCatalog</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -397,6 +399,7 @@
 }
 </script>
 
+## Document-to-document relevant assessment for TREC Genomics Track 2005
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\datasets\20221115_trec-doc-2-doc-relevance-assessment.json" target="_blank"> Get JSON-LD</a> | <a href="https://doi.org/10.5281/zenodo.7324822" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Dataset</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -651,6 +654,7 @@
 }
 </script>
 
+## Fleiss kappa for doc-2-doc relevance assessment
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\datasets\20221119_fleiss-kappa-doc2doc-relevance-assessment.json" target="_blank"> Get JSON-LD</a> | <a href="https://doi.org/10.5281/zenodo.7338056" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Dataset</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -868,6 +872,7 @@
 }
 </script>
 
+## Protein Function Embeddings: First Beta Release of Datasets
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\datasets\20230402_protein-function-embeddings.json" target="_blank"> Get JSON-LD</a> | <a href="https://doi.org/10.5281/zenodo.7793384" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit DataCatalog</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>

diff --git a/docs/previous_members.md b/docs/previous_members.md
@@ -1,5 +1,6 @@
 # Previous_members metadata
 
+### Andrea Robayo-Gama
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\previous_members\andrea-robayo-gama.json" target="_blank"> Get JSON-LD</a> | <a href="https://zbmed-semtec.github.io/previous_members/#andrea-robayo-gama" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -24,6 +25,7 @@
 }
 </script>
 
+### Ashley Ritchie
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\previous_members\ashley-ritchie.json" target="_blank"> Get JSON-LD</a> | <a href="https://zbmed-semtec.github.io/previous_members/#ashley-ritchie" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -48,6 +50,7 @@
 }
 </script>
 
+###  Maria Fernanda Cadena
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\previous_members\cadena_0000-0002-5915-8895.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0000-0002-5915-8895" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -72,6 +75,7 @@
 }
 </script>
 
+### Vishnu Vardhan Dadi
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\previous_members\dadi_0000-0002-3082-7522.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0000-0002-3082-7522" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -96,6 +100,7 @@
 }
 </script>
 
+### Tim Fellerhoff
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\previous_members\fellerhoff_0000-0002-8725-1317.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0000-0002-8725-1317" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -120,6 +125,7 @@
 }
 </script>
 
+### Olga Giraldo
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\previous_members\giraldo_0000-0003-2978-8922.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0000-0003-2978-8922" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -144,6 +150,7 @@
 }
 </script>
 
+### Honey Lahoria
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\previous_members\lahoria_0009-0004-0369-5677.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0009-0004-0369-5677" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -168,6 +175,7 @@
 }
 </script>
 
+### Georgi Lazarov
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\previous_members\lazarov_0000-0002-0762-4305.json" target="_blank"> Get JSON-LD</a> | <a href="http://orcid.org/0000-0002-0762-4305" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -192,6 +200,7 @@
 }
 </script>
 
+### Muhammad Talha
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\previous_members\muhammad-talha.json" target="_blank"> Get JSON-LD</a> | <a href="https://zbmed-semtec.github.io/previous_members/#muhammad-talha" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -216,6 +225,7 @@
 }
 </script>
 
+### Guillermo Rocamora Pérez
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\previous_members\rocamora_0000-0002-4795-3648.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0000-0002-4795-3648" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -240,6 +250,7 @@
 }
 </script>
 
+### Benjamin Wolff
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\previous_members\wolff_0000-0001-9345-8958.json" target="_blank"> Get JSON-LD</a> | <a href="https://orcid.org/0000-0001-9345-8958" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit Person</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>

diff --git a/docs/software.md b/docs/software.md
@@ -1,5 +1,6 @@
 # Software metadata
 
+## BioHackOutcomes
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\software\BioHackOutcomes.json" target="_blank"> Get JSON-LD</a> | <a href="https://github.com/zbmed-semtec/BioHackOutcomes" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit SoftwareSourceCode</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -140,6 +141,7 @@
 }
 </script>
 
+## Metadata model for machine-actionable Software Management Plans
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\software\maSMPs.json" target="_blank"> Get JSON-LD</a> | <a href="https://github.com/zbmed-semtec/maSMPs" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit SoftwareSourceCode</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -361,6 +363,7 @@
 }
 </script>
 
+## Mowl-graph2doc2vec
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\software\mowl-graph2doc2vec.json" target="_blank"> Get JSON-LD</a> | <a href="https://github.com/zbmed-semtec/mowl-graph2doc2vec" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit SoftwareSourceCode</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -572,6 +575,7 @@
 }
 </script>
 
+## Protein-function-embeddings-thesis
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\software\protein-function-embeddings-thesis.json" target="_blank"> Get JSON-LD</a> | <a href="https://github.com/zbmed-semtec/protein-function-embeddings-thesis" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit SoftwareSourceCode</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -732,6 +736,7 @@
 }
 </script>
 
+## Topic-categorization-system
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\software\topic-categorization-system.json" target="_blank"> Get JSON-LD</a> | <a href="https://github.com/zbmed-semtec/topic-categorization-system" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit SoftwareSourceCode</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -932,6 +937,7 @@
 }
 </script>
 
+## TREC-doc-2-doc-relevance
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\software\TREC-doc-2-doc-relevance.json" target="_blank"> Get JSON-LD</a> | <a href="https://github.com/zbmed-semtec/TREC-doc-2-doc-relevance" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit SoftwareSourceCode</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>
@@ -1168,6 +1174,7 @@
 }
 </script>
 
+## Zbmed-semtec.github.io
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\software\zbmed-semtec.github.io.json" target="_blank"> Get JSON-LD</a> | <a href="https://github.com/zbmed-semtec/zbmed-semtec.github.io" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit SoftwareSourceCode</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>

diff --git a/docs/vocabularies.md b/docs/vocabularies.md
@@ -1,5 +1,6 @@
 # Vocabularies metadata
 
+## maSMP Ontology
 <p><img src = "/images/get.svg" alt="Get JSON-LD"/><a href="https://raw.githubusercontent.com/zbmed-semtec/zbmed-semtec.github.io/main/metadata\vocabularies\maSMP.json" target="_blank"> Get JSON-LD</a> | <a href="https://doi.org/10.5281/zenodo.8089518" target="_blank"><img src = "/images/visit.svg" alt="Visit URL"/> Visit DefinedTermSet</a></p>
 <table style="background-color: #F5F5F5; width: 100%; text-align: left; border: 1px solid black;">
 <tbody>