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| # This workflow will generate/update a/the profile HTML page each time the | |
| # DDE genrates and update a JSON-LD in the _data/specifications folder (repo) | |
| name: generate-profile | |
| on: | |
| push: | |
| branches: | |
| - master | |
| # pull_request: | |
| # types: [opened, reopened] | |
| env: | |
| GH_TOKEN: ${{ secrets.bernd_mueller_workflow_token }} | |
| # inputs: | |
| # branch-name: | |
| # description: $`date +%Y_%m_%d-%H_%M_%S` | |
| # required: true | |
| jobs: | |
| generate-profile: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Spec Repo and Retreive the Preceding Commit | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Get Changed Files | |
| id: changed-files | |
| uses: tj-actions/changed-files@v21 | |
| - name: List Changed Files | |
| run: | | |
| for file in ${{ steps.changed-files.outputs.all_changed_files }}; do | |
| echo "$file was changed" | |
| done | |
| - name: Setup Python 3.8 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.8 #install the python needed | |
| - name: Install Python dependencies | |
| uses: py-actions/py-dependency-install@v3 | |
| with: | |
| path: "./.github/workflows/requirements.txt" | |
| - name: Checkout the DDE repo | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.bernd_mueller_workflow_token }} | |
| run: | | |
| git clone https://user:[email protected]/zbmed-semtec/bioschemas-dde | |
| cd bioschemas-dde | |
| git checkout main | |
| ls | |
| - name: Checkout the Website repo | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.bernd_mueller_workflow_token }} | |
| run: | | |
| git clone https://user:[email protected]/zbmed-semtec/bioschemas.github.io | |
| cd bioschemas.github.io | |
| git pull | |
| ls | |
| - name: Checkout a new branch - Website repository | |
| run: | | |
| cd bioschemas.github.io | |
| git pull | |
| git checkout -b `date +%Y_%m_%d-%H_%M` | |
| cd .. | |
| - name: Exectute script for the enrichment with triples from the Profile Ontology | |
| run: | | |
| python ./.github/workflows/process_profile_script.py ${{steps.changed-files.outputs.all_changed_files}} | |
| - name: Execute the config files update Python Script | |
| run: | | |
| python ./.github/workflows/config_file_update_script.py ${{steps.changed-files.outputs.all_changed_files}} | |
| - name: Execute the profile rendering Python Script | |
| run: | | |
| python ./.github/workflows/profile_generation_script.py ${{steps.changed-files.outputs.all_changed_files}} bioschemas.github.io | |
| - name: Setup the Github TOKEN | |
| uses: oleksiyrudenko/gha-git-credentials@v2-latest | |
| with: | |
| path: bioschemas.github.io | |
| email: [email protected] | |
| name: bernd-mueller | |
| actor: bernd-mueller | |
| token: '${{secrets.bernd_mueller_workflow_token}}' | |
| - name: Commit and Push the changes in the website | |
| run: | | |
| sleep 5 | |
| cd bioschemas.github.io | |
| git config user.name "bernd-mueller" | |
| git config user.email "[email protected]" | |
| git status | |
| git add . | |
| git commit -m "Updating Profile" | |
| git push --set-upstream -u origin `date +%Y_%m_%d-%H_%M` | |
| - name: Create a pull request | |
| run: | | |
| sleep 30 | |
| cd bioschemas.github.io | |
| gh pr create --title "Auto-Rendering Profile" --body "This pull request has been created by a guithub action, after adding/updating a profile in the specifications repo." | |
| - name: Commit and Push the changes in the DDE repository | |
| run: | | |
| cd bioschemas-dde | |
| git config user.name "bernd-mueller" | |
| git config user.email "[email protected]" | |
| git status | |
| git add . | |
| git commit -m "Updating Profile" | |
| git push origin -f main | |
| - name: End Workflow | |
| run: | | |
| echo "Check the Website !" |