build(deps): update barnard59 packages

.changeset/flat-lamps-join.md

@@ -0,0 +1,12 @@
+---
+"@cube-creator/cli": patch
+---
+
+Update barnard59 packages:
+- barnard59 1.1.0 => 5.0.1
+- barnard59-base 1.1.0 => 2.4.2
+- barnard59-formats 1.1.0 => 2.1.0
+- barnard59-graph-store 1.0.0 => 5.1.2
+- barnard59-http 1.1.1 => 2.0.0
+- barnard59-rdf 1.0.0 => 3.4.0
+- barnard59-validate-shacl 0.3.0 => barnard59-shacl 1.4.5

.changeset/tall-walls-sneeze.md

@@ -0,0 +1,5 @@
+---
+"@cube-creator/cli": patch
+---
+
+Use package barnard59-cube

cli/lib/commands/runner.ts

@@ -102,11 +102,12 @@
 
     await prepare?.(command, variables)
 
-    const { default: Runner } = await importDynamic('barnard59/runner.js')
+    const { default: Runner } = await importDynamic<typeof import('barnard59/runner.js')>('barnard59/runner.js')
+    const env = await importDynamic<typeof import('barnard59-env')>('barnard59-env')
     const run = await Runner(clownface({
       dataset,
       term: pipelines.Entrypoint,
-    }), {
+    }), env.default, {
       basePath: path.resolve(basePath, 'pipelines'),
       outputStream: process.stdout,
       variables,

cli/lib/module.ts

@@ -1,5 +1,5 @@
 interface DynamicImport {
-  (m: string): Promise<any>
+  <T = any>(m: string): Promise<T>
 }
 
 // eslint-disable-next-line no-new-func

cli/package.json

@@ -42,13 +42,14 @@
     "@zazuko/shacl-playground": "^1.0.0",
     "alcaeus": "^2",
     "aws-sdk": "^2.559.0",
-    "barnard59": "^1.1.0",
-    "barnard59-base": "^1.1.0",
-    "barnard59-formats": "^1.1.0",
-    "barnard59-graph-store": "^1.0.0",
-    "barnard59-http": "^1.1.1",
-    "barnard59-rdf": "^1.0.0",
-    "barnard59-validate-shacl": "^0.3.8",
+    "barnard59": "^5.0.1",
+    "barnard59-base": "^2.4.2",
+    "barnard59-cube": "^1.4.3",
+    "barnard59-formats": "^2.1.0",
+    "barnard59-graph-store": "^5.1.2",
+    "barnard59-http": "^2.0.0",
+    "barnard59-rdf": "^3.4.0",
+    "barnard59-shacl": "^1.4.5",
     "body-parser": "^1.19.0",
     "clownface": "^1",
     "commander": "^4.1.1",
@@ -83,11 +84,6 @@
     "@cube-creator/testing": "^0.1.21",
     "@tpluscode/rdf-ns-builders": "^1.0.0",
     "@tpluscode/sparql-builder": "^0.3.15",
-    "@types/barnard59": "^1.0.1",
-    "@types/barnard59-base": "^1.0.1",
-    "@types/barnard59-core": "^1.0.2",
-    "@types/barnard59-graph-store": "^1.0.0",
-    "@types/barnard59-validate-shacl": "^0.3.2",
     "@types/body-parser": "^1.19.0",
     "@types/chai": "^4.2.13",
     "@types/chai-as-promised": "^7.1.3",

cli/pipelines/import.ttl

@@ -3,11 +3,24 @@
 @prefix code: <https://code.described.at/> .
 
 <#Main> a :Pipeline ;
-        :steps
-          [
-            :stepList
-              ( <#concatStreams> <#validate> <#StreamOutput> ) ;
-          ] .
+  :variables
+    [
+      :variable
+        [
+          :name "executionUrl" ;
+          :required false
+        ] ;
+      :variable
+        [
+          :name "lastTransformed" ;
+          :required false
+        ] ;
+    ] ;
+  :steps
+    [
+      :stepList
+        ( <#concatStreams> <#validate> <#StreamOutput> ) ;
+    ] .
 
 <#concatStreams>
   a :Step ;

cli/pipelines/main.ttl

@@ -157,7 +157,7 @@
 
 <#toObservation> a :Step;
   code:implementedBy [ a code:EcmaScriptModule;
-                       code:link <node:barnard59-rdf/cube.js#toObservation>
+                       code:link <node:barnard59-cube/cube.js#toObservation>
                      ] ;
   code:arguments [
                       code:name "observations";

cli/pipelines/publish-to-graph-store.ttl

@@ -10,6 +10,8 @@ _:upload
   a                  :Step ;
   code:implementedBy [ a         code:EcmaScriptModule ;
                          code:link <node:barnard59-graph-store/post.js#default> ] ;
+  code:arguments     [ code:name  "graph" ;
+                         code:value "target-graph"^^:VariableName ] ;
   code:arguments     [ code:name  "endpoint" ;
                          code:value "publish-graph-store-endpoint"^^:VariableName ] ;
   code:arguments     [ code:name  "user" ;

cli/pipelines/publish.ttl

@@ -4,17 +4,30 @@
 @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
 
 <#Main> a :Pipeline ;
-        :steps
-          [
-            :stepList
-              (
-                <#concatStreams>
-                <#removeHydraTriples>
-                <#uniqueBnodes>
-                <#countOutputQuads>
-                <#StreamOutput>
-              ) ;
-          ] .
+  :variables
+    [
+      :variable
+        [
+          :name "lastTransformed" ;
+          :required false
+        ] ;
+      :variable
+        [
+          :name "bnodeUuid" ;
+          :required false
+        ] ;
+    ] ;
+  :steps
+    [
+      :stepList
+        (
+          <#concatStreams>
+          <#removeHydraTriples>
+          <#uniqueBnodes>
+          <#countOutputQuads>
+          <#StreamOutput>
+        ) ;
+    ] .
 
 <#concatStreams>
   a :Step ;
@@ -57,7 +70,7 @@
   code:implementedBy
     [
       a code:EcmaScriptModule ;
-      code:link <node:barnard59-validate-shacl/validate.js#shacl>
+      code:link <node:barnard59-shacl/validate.js#shacl>
     ] ;
   code:arguments
     [ code:name "shape" ; code:value <#concatShapes> ] ,
@@ -129,24 +142,24 @@
     ] .
 
 <#shapeURLs> a :Step   ;
-    code:implementedBy [ 
+    code:implementedBy [
       a code:EcmaScriptModule  ;
-      code:link <node:stream#Readable.from> ;     
+      code:link <node:stream#Readable.from> ;
     ] ;
      code:arguments (
       """[
-        'https://cube.link/v0.1.0/shape/standalone-constraint-constraint',
-        // 'https://cube.link/v0.1.0/shape/datacatalog-constraint',        
-      ]"""^^code:EcmaScript  
+        'https://cube.link/latest/shape/standalone-constraint-constraint',
+        // 'https://cube.link/v0.1.0/shape/datacatalog-constraint',
+      ]"""^^code:EcmaScript
      )
     .
 
 <#getShapes>  a :Step ;
-    code:implementedBy [ 
+    code:implementedBy [
       a code:EcmaScriptModule  ;
-      code:link <node:barnard59-base/forEach.js#default> ;     
+      code:link <node:barnard59-base/forEach.js#default> ;
     ] ;
-    code:arguments ( <#getShape> "shapeURL" ) 
+    code:arguments ( <#getShape> "shapeURL" )
   .
 
 <#getShape> a :Pipeline , :ReadableObjectMode;
@@ -156,7 +169,7 @@
         (
           <#fetch>
           <#parse>
-        ) 
+        )
     ] .
 
 <#fetch>  a :Step ;
@@ -177,7 +190,7 @@
     [
       code:link <node:barnard59-formats/n3.js#parse> ;
       a code:EcmaScriptModule ;
-    ] 
+    ]
   .
 
 

cli/pipelines/to-graph-store.ttl

@@ -16,6 +16,8 @@ _:upload
   a                  :Step ;
   code:implementedBy [ a         code:EcmaScriptModule ;
                        code:link <node:barnard59-graph-store/put.js#default> ] ;
+  code:arguments     [ code:name  "graph" ;
+                       code:value "graph"^^:VariableName ] ;
   code:arguments     [ code:name  "endpoint" ;
                        code:value "graph-store-endpoint"^^:VariableName ] ;
   code:arguments     [ code:name  "user" ;

cli/pipelines/unlist.ttl

@@ -4,7 +4,20 @@
 @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
 
 <#Main> a :Pipeline ;
-        :steps [ :stepList ( <#expirePreviousVersions> <#StreamOutput> ) ] ;
+  :variables
+    [
+      :variable
+        [
+          :name "lastTransformed" ;
+          :required false
+        ] ;
+      :variable
+        [
+          :name "publish-job" ;
+          :required false
+        ] ;
+    ] ;
+  :steps [ :stepList ( <#expirePreviousVersions> <#StreamOutput> ) ] ;
 .
 
 <#expirePreviousVersions>
@@ -15,18 +28,14 @@
 
 <#StreamOutput>
   a      :Pipeline, :WritableObjectMode ;
-  :steps [ :stepList ( _:setGraph _:upload ) ] ;.
-
-_:setGraph
-  a                  :Step ;
-  code:implementedBy [ a         code:EcmaScriptModule ;
-                       code:link <node:barnard59-rdf/setGraph.js#default> ] ;
-  code:arguments     ( "target-graph"^^:VariableName ) .
+  :steps [ :stepList ( _:upload ) ] ;.
 
 _:upload
   a                  :Step ;
   code:implementedBy [ a         code:EcmaScriptModule ;
                        code:link <node:barnard59-graph-store/post.js#default> ] ;
+  code:arguments     [ code:name  "graph" ;
+                       code:value "target-graph"^^:VariableName ] ;
   code:arguments     [ code:name  "endpoint" ;
                        code:value "publish-graph-store-endpoint"^^:VariableName ] ;
   code:arguments     [ code:name  "user" ;