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Pin basicpy version in pip install
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This makes the version of the code installed in the container predictable
and stable. Ideally this Dockerfile should be part of the basicpy repo and
releases synchronized with the releases of basicpy itself, though.
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jmuhlich committed May 16, 2024
1 parent 7c812f3 commit 7d96405
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -12,7 +12,7 @@ ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:
# Installing necessary packages

# Installing basicpy and other pip packages
RUN pip --no-cache-dir install git+https://github.com/peng-lab/BaSiCpy@dev bioformats_jar
RUN pip --no-cache-dir install git+https://github.com/peng-lab/BaSiCpy@v1.2.0 bioformats_jar

# Copy script and test run
COPY ./main.py /opt/
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