Skip to content

Commit

Permalink
Set scikit-image minimum version to 0.21.0
Browse files Browse the repository at this point in the history
This avoids the problem introduced in 0.20.0 where the sample datasets are
downloaded to a cache directory upon import of the top-level module. This
causes an error when the container is being run as the calling user rather
than root as the default cache directory is not writable. It is also a waste
of time and network bandwidth as the datasets will never be used here.
  • Loading branch information
jmuhlich authored Jul 22, 2024
1 parent bf8ce25 commit 53058a6
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ ENV PATH=/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:
# Installing necessary packages

# Installing basicpy and other pip packages
RUN pip --no-cache-dir install basicpy==1.2.0 bioformats_jar
RUN pip --no-cache-dir install basicpy==1.2.0 bioformats_jar 'scikit-image>=0.21.0'

# Pre-fetch bioformats jars to a world-readable location.
# Force TLS 1.2 to work around a Java bug in the JDK version in this container.
Expand Down

0 comments on commit 53058a6

Please sign in to comment.