[ENH] Seeding on the white matter-gray mattter interface #1096
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Here is a first attempt at seeding in the gray matter white matter interface using hidden Markov Random Field models (as implemented in DIPY) on slightly modified anisotropic power maps (no T1 needed). I also set this as the default seeding to see which tests it would throw
Screen.Recording.2024-01-27.at.11.38.56.AM.mov
There are some other minor bug fixes in here:
Fix IFOF color scheme
Throw warning and exit in
apply_cmd_to_afq_derivs
if you are trying to clobber() a directory that doesnt exist yet