Release notes for version 0.4

CHANGES.rst

@@ -1,3 +1,66 @@
+0.4 (August 17, 2020)
+=====================
+This release adds several new registration templates and techniques, providing 
+major improvements in bundle segmentation with waypoint ROIs. In addition, new 
+visualization methods using plotly were introduced, to generate HTML-based 
+visualizations of bundles, and to compare longitudinal measurements. This version
+relies on pybids for parsing of input datasets. Many other bug fixes and improvements.
+
+  * Throw error when backend is misnamed (#363)
+  * Export what is natural to the viz library (#361)
+  * Upgrade FURY to support newer VTK (#359)
+  * Allow for selecting subject(s) by position after randomization (#352)
+  * Ignore positional arguments in non AFQ functions for docstring parser, add test (#354)
+  * Auto doc fix (#350)
+  * Clips streamlines by the inclusion ROI. (#159)
+  * S3 Bids Fetch Fixes (#340)
+  * BF: AFQ derivatives should be saved inside "derivatives/afq" (#348)
+  * Compare profiles from CSVs (#317)
+  * New CLI / Config (#310)
+  * Update versions of scipy and vtk. (#342)
+  * Generating a wm mask out of multiple scalars (#330)
+  * Add classes for fetching a BIDS-compliant study on S3 (#290)
+  * Remove this section of the pyproject. (#337)
+  * Setup with config redux ... redux (#326)
+  * Updates DIPY url used in metadata. (#333)
+  * b0_threshold default updated (#331)
+  * Make power maps the default for registration (#329)
+  * b value selection fix and test, power map test, models moved to own submodule (#322)
+  * Revert "Adds a setup.cfg file and cleans up metadata and other hacks" (#324)
+  * Adds a setup.cfg file and cleans up metadata and other hacks (#320)
+  * Allow user to customize registration targets, fix some other aspects of registration (#283)
+  * Bvals preallocation (#63)
+  * Remove hcc from defaults (#315)
+  * export_all function (#312)
+  * Kaleido instead of orcas (#311)
+  * Viz module uses fury and plotly (#289)
+  * Allow study selection for fetch_hcp (#300)
+  * RF: Speed up testing by moving viz test into API run. (#302)
+  * Pybids (#284)
+  * Plot tract profiles in CLI (#280)
+  * Remove cloukdnot examples (#297)
+  * Make save intermediates folder if it does not already exist (#296)
+  * Remove six (#295)
+  * use rapidfuzz instead of fuzzywuzzy (#266)
+  * Extra requirements feature added, consistent with current requirement files (#291)
+  * Bump pybids to 0.11.1 (#293)
+  * make_bundle_dict should only be called after reg_template is settled (#281)
+  * Add instructions for disabling github actions on forked repos. (#287)
+  * Fix two bugs, makes tests work (#282)
+  * Visualize all tract profiles for a scalar in one plot (#268)
+  * Profile format changed to be less tall and more wide, like mAFQ (#279)
+  * Added random_seed parameter in tractography (#270)
+  * Bring fetch_hcp into alignment with other fetch functions (#272)
+  * Api File Naming (#269)
+  * Fixed numpydoc version to 0.9.2 (#271)
+  * Use xvfb_wrapper for aws (#257)
+  * Save mask as float32, so that we can open it in MI-Brain. (#260)
+  * Update reqs 253 (#254)
+  * Use valid value for Zenodo license field. (#249)
+  * BF: Use Tableau 20 colors for the 20 waypoint-defined bundles. (#251)
+  * BF: Actually use the user-provided path for saving HCP files. (#250)
+
+
 0.3 (April 21, 2020)
 ====================
 This release includes several important fixes and enhancements. In particular,