The "rNeighborQTL" package provides a set of functions to perform a genome scan of neighbor QTL effects.
CRAN version is available at https://cran.r-project.org/package=rNeighborQTL.
To install the deveper version via GitHub, run devtools::install_github("yassato/rNeighborQTL", repo="master").
Note that the rNeighborQTL requires the following R packages.
- gaston
- parallel
- qtl
version 1.1.2 (developer version): rebuild using R version 4.0.3; citations updated.
version 1.1.1 (CRAN release version): partial PVEs separated in calc_PVEnei(); plot_nei() refined.
version 1.1.0: calc_neiprob(), eff_neighbor(), scan_neighbor() refactored.
version 1.0.0: Initial version registered in CRAN.
Sato Y, Takeda K, Nagano AJ (2021) Neighbor QTL: an interval mapping method for quantitative trait loci underlying plant neighborhood effects. G3; Genes|Genomes|Genetics https://doi.org/10.1093/g3journal/jkab017