parse config field

yaseminbridges · Jun 2, 2024 · 724d6b3 · 724d6b3
1 parent 5815472
commit 724d6b3
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/src/pheval_ai_marrvel/runner.py b/src/pheval_ai_marrvel/runner.py
@@ -6,6 +6,7 @@
 from pheval_ai_marrvel.post_process.post_process import post_process_results
 from pheval_ai_marrvel.prepare.prepare import prepare_inputs
 from pheval_ai_marrvel.run.run import run_commands
+from pheval_ai_marrvel.tool_specific_configuration_options import AIMARRVELConfigurations
 
 
 @dataclass
@@ -29,11 +30,15 @@ def run(self):
         Run AI-MARRVEL to produce the raw output.
         """
         print("running with AI-MARRVEL")
+        config = AIMARRVELConfigurations.parse_config(
+            self.input_dir_config.tool_specific_configuration_options
+        )
         run_commands(
             tool_input_commands_dir=self.tool_input_commands_dir,
             testdata_dir=self.testdata_dir,
             input_dir=self.input_dir,
             output_dir=self.output_dir,
+            environment=config.environment,
         )
 
     def post_process(self):