geno2pheno

Application to run sequences through geno2pheno

Set up and dependencies can be found in ./dockerfile

Example from local terminal - no server set up, install selenium and chromedriver locally:

python selenium_python_geno2pheno.py ./unaligned_input.fasta

Example usage from terminal to remote server set up with repo:

curl -F file=@./unaligned_input.fasta -o g2p.tar.gz -L http://server.url/

Extract file received from curl (includes _log and .fasta)

tar -xzvf g2p.tar.gz