Change test method with file size Rdata + expect_num_outputs

Failed Tests RData : Binary data detected, not displaying diff
workflow4metabolomics · Oct 24, 2024 · c9de9b2 · c9de9b2
1 parent f8e1a62
commit c9de9b2
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Showing 4 changed files with 8 additions and 8 deletions.
diff --git a/tools/camera/findAdducts.xml b/tools/camera/findAdducts.xml
@@ -110,7 +110,7 @@
         <data name="camera_findAdducts_rdata" format="rdata" label="${image.name[:-6]}.findAdducts.RData" from_work_dir="camera_findAdducts.RData" />
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="2">
             <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.groupCorr.findIsotopes.RData" />
             <!--<param name="ppm" value="5" />
             <param name="mzabs" value="0.015" />
@@ -122,7 +122,7 @@
             <param name="psg_list" value="NULL" />-->
             <expand macro="test_file_load_single"/>
             <output name="variableMetadata" file="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.groupCorr.findIsotopes.findAdducts.variableMetadata.tsv" />
-            <output name="camera_findAdducts_rdata" file="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.groupCorr.findIsotopes.findAdducts.RData" />
+            <output name="camera_findAdducts_rdata" value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.groupCorr.findIsotopes.findAdducts.RData" compare="sim_size" delta="300" />
         </test>
     </tests>
     <help><![CDATA[

diff --git a/tools/camera/findIsotopes.xml b/tools/camera/findIsotopes.xml
@@ -49,7 +49,7 @@
         <data name="camera_findIsotopes_rdata" format="rdata" label="${image.name[:-6]}.findIsotopes.RData" from_work_dir="camera_findIsotopes.RData" />
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="2">
             <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.groupCorr.RData" />
             <!--<param name="maxcharge" value="3" />
             <param name="maxiso" value="4" />
@@ -60,7 +60,7 @@
             <param name="filter" value="FALSE" />-->
             <expand macro="test_file_load_single"/>
             <output name="variableMetadata" file="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.groupCorr.findIsotopes.variableMetadata.tsv" />
-            <output name="camera_findIsotopes_rdata" file="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.groupCorr.findIsotopes.RData" />
+            <output name="camera_findIsotopes_rdata"  value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.groupCorr.findIsotopes.RData" compare="sim_size" delta="300" />
         </test>
     </tests>
     <help><![CDATA[

diff --git a/tools/camera/groupCorr.xml b/tools/camera/groupCorr.xml
@@ -57,7 +57,7 @@
         <data name="camera_groupCorr_rdata" format="rdata" label="${image.name[:-6]}.groupCorr.RData" from_work_dir="camera_groupCorr.RData" />
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="2">
             <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.RData" />
             <!--<param name="cor_eic_th" value="0.75" />
             <param name="pval" value="0.05" />
@@ -69,7 +69,7 @@
             <param name="intval" value="into" />-->
             <expand macro="test_file_load_single"/>
             <output name="variableMetadata" file="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.groupCorr.variableMetadata.tsv" />
-            <output name="camera_groupCorr_rdata" file="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.groupCorr.RData" />
+            <output name="camera_groupCorr_rdata" value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.groupCorr.RData" compare="sim_size" delta="300" />
         </test>
     </tests>
     <help><![CDATA[

diff --git a/tools/camera/groupFWHM.xml b/tools/camera/groupFWHM.xml
@@ -43,14 +43,14 @@
     </outputs>
 
     <tests>
-        <test>
+        <test expect_num_outputs="2">
             <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.RData" />
             <!--<param name="sigma" value="6" />
             <param name="perfwhm" value="0.6" />
             <param name="intval" value="into" />-->
             <expand macro="test_file_load_single"/>
             <output name="variableMetadata" file="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.variableMetadata.tsv" />
-            <output name="camera_fwhm_rdata" file="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.RData" />
+            <output name="camera_fwhm_rdata" value="faahKO-single-class.xset.merged.group.retcor.group.fillpeaks.fwhm.RData" compare="sim_size" delta="300" />
         </test>
     </tests>
     <help><![CDATA[