Create tool_dependencies.xml

install/package_bioconductor_metaMS/tool_dependencies.xml

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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.1.2">
+        <repository name="package_r_3_1_2" owner="iuc" prior_installation_required="True" />
+    </package>
+
+    <package name="r-batch" version="1.1_4">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+                    <repository name="package_r_3_1_2" owner="iuc">
+                        <package name="R" version="3.1.2" />
+                    </repository>
+
+                    <package>http://application.sb-roscoff.fr/download/w4m/cran-archive/package_r_batch_1_1_4//batch_1.1-4.tar.gz</package>
+                </action>
+            </actions>
+        </install>
+        <readme>
+batch: https://cran.r-project.org/web/packages/batch/index.html
+batch: Batching Routines in Parallel and Passing Command-Line Arguments to R
+
+Functions to allow you to easily pass command-line arguments into R, and functions to aid in submitting your R code in parallel on a cluster and joining the results afterward (e.g. multiple parameter values for simulations running in parallel, splitting up a permutation test in parallel, etc.). See ‘parseCommandArgs(...)’ for the main example of how to use this package.
+
+Author: 	Thomas Hoffmann tjhoffm at gmail.com
+
+
+        </readme>
+    </package>
+</tool_dependency>