Process GPML changes

wikipathways · Sep 24, 2024 · c371cd1 · c371cd1
1 parent 9de9ce8
commit c371cd1
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Showing 8 changed files with 3,249 additions and 907 deletions.
diff --git a/pathways/WP2/WP2.gpml b/pathways/WP2/WP2.gpml
diff --git a/pathways/WP2011/WP2011.gpml b/pathways/WP2011/WP2011.gpml
diff --git a/pathways/WP250/WP250.gpml b/pathways/WP250/WP250.gpml
diff --git a/pathways/WP416/WP416.gpml b/pathways/WP416/WP416.gpml
@@ -1,5 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Histidine, purine, and pyrimidine superpathway" Data-Source="WikiPathways" Version="WP416_r135448" Author="[M.Braymer, MaintBot, Ddigles, Egonw, Mkutmon, DeSl, Elisa, Eweitz, Khanspers]" Last-Modified="20240905215849" Organism="Saccharomyces cerevisiae">
+<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="Histidine, purine, and pyrimidine superpathway" Data-Source="WikiPathways" Version="WP416_r135544" Author="[M.Braymer, MaintBot, Ddigles, Egonw, Mkutmon, DeSl, Elisa, Eweitz, Khanspers]" Last-Modified="20240923200041" Organism="Saccharomyces cerevisiae">
+ <Comment Source="WikiPathways-description"></Comment>
  <BiopaxRef>e70</BiopaxRef>
  <Graphics BoardWidth="1690.5195681511468" BoardHeight="2079.5" />
  <DataNode TextLabel="AMP" GraphId="a1754" Type="Metabolite">
@@ -1831,11 +1832,6 @@
  <InfoBox CenterX="6.666666666666667" CenterY="6.666666666666667" />
  <Legend CenterX="0.0" CenterY="0.0" />
  <Biopax>
- <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
- <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">classic metabolic pathway</bp:TERM>
- <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000002</bp:ID>
- <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
- </bp:openControlledVocabulary>
  <bp:PublicationXref xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:id="e70">
  <bp:ID rdf:datatype="http://www.w3.org/2001/XMLSchema#string">https://pathway.yeastgenome.org/YEAST/NEW-IMAGE?type=NIL&amp;object=PRPP-PWY-1</bp:ID>
  <bp:DB rdf:datatype="http://www.w3.org/2001/XMLSchema#string">URL</bp:DB>
@@ -1848,6 +1844,11 @@
  <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000012</bp:ID>
  <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
  </bp:openControlledVocabulary>
+ <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
+ <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">classic metabolic pathway</bp:TERM>
+ <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000002</bp:ID>
+ <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
+ </bp:openControlledVocabulary>
  </Biopax>
 </Pathway>
 
diff --git a/pathways/WP4522/WP4522.gpml b/pathways/WP4522/WP4522.gpml
diff --git a/pathways/WP5323/WP5323.gpml b/pathways/WP5323/WP5323.gpml
diff --git a/pathways/WP5475/WP5475.gpml b/pathways/WP5475/WP5475.gpml
diff --git a/pathways/WP5483/WP5483.gpml b/pathways/WP5483/WP5483.gpml