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Update citedin in frontmatter .md files
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5 changes: 4 additions & 1 deletion pathways/WP108/WP108.md
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Expand Up @@ -14,7 +14,10 @@ authors:
- Fehrhart
- Eweitz
- Egonw
citedin: ''
citedin:
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
communities: []
description: ''
last-edited: 2024-08-02
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3 changes: 3 additions & 0 deletions pathways/WP1248/WP1248.md
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Expand Up @@ -14,6 +14,9 @@ citedin:
Stem Cells from Embryogenesis to Adulthood (2022)
- link: PMC6657571
title: Quizalofop-p-Ethyl Induces Adipogenesis in 3T3-L1 Adipocytes (2019)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: ''
last-edited: 2019-09-17
organisms:
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3 changes: 3 additions & 0 deletions pathways/WP1251/WP1251.md
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Expand Up @@ -22,6 +22,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: ''
last-edited: 2017-10-05
organisms:
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3 changes: 3 additions & 0 deletions pathways/WP1259/WP1259.md
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Expand Up @@ -22,6 +22,9 @@ citedin:
- link: PMC5075206
title: Hepatic transcriptome implications for palm fruit juice deterrence of type
2 diabetes mellitus in young male Nile rats (2016)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: This pathway is about carotenoid metabolism. It is mainly created by
the NuGO focusteam on Carotenoid metabolism. Finally it was subject to a text mining
workflow which added some additional entities.
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3 changes: 3 additions & 0 deletions pathways/WP1269/WP1269.md
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Expand Up @@ -22,6 +22,9 @@ citedin:
- link: PMC9530846
title: The necroptosis-inducing pseudokinase mixed lineage kinase domain-like regulates
the adipogenic differentiation of pre-adipocytes (2022)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: Complete fatty acid beta-oxidation pathway for saturated and unsaturated
fatty acids, developed and curated internally by BiGCaT Bioinformatics. This pathway
was previously split into three parts plus a meta file for statistics. If you still
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4 changes: 4 additions & 0 deletions pathways/WP1272/WP1272.md
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Expand Up @@ -12,6 +12,10 @@ authors:
- Lindarieswijk
- Finterly
- Eweitz
citedin:
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: 'The selenium-centred micronutrient biological network. The most relevant
biochemical processes related to selenium in the context of metabolism, oxidation
and inflammation are represented. Also, the compartmental separation (intracellular
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5 changes: 4 additions & 1 deletion pathways/WP1273/WP1273.md
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Expand Up @@ -14,7 +14,10 @@ authors:
- Eweitz
- AlexanderPico
- Larsgw
citedin: ''
citedin:
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
communities: []
description: 'The folic acid-centred micronutrient biological network. The most relevant
biochemical processes related to folic acid in the context of metabolism, oxidation
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3 changes: 3 additions & 0 deletions pathways/WP1274/WP1274.md
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Expand Up @@ -26,6 +26,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: Oxidation of a substrate by Cytochrome P450. Adapted from Niesink et
al., Chapter 3, p. 47-48.
last-edited: 2023-02-01
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3 changes: 3 additions & 0 deletions pathways/WP157/WP157.md
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Expand Up @@ -24,6 +24,9 @@ citedin:
Marathon Mice (DUhTP) Reveals Higher Sterol Regulatory Element-Binding Protein
(SREBP) Related mRNA Expression in the Liver and Higher Serum Levels of Progesterone
(2016)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: Glycolysis is the metabolic pathway that converts glucose C6H12O6, into
pyruvate, CH3COCOO− + H+. The free energy released in this process is used to
form the ATP and NADH. Gluconeogenesis is a metabolic pathway that results in the
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4 changes: 4 additions & 0 deletions pathways/WP1596/WP1596.md
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Expand Up @@ -13,6 +13,10 @@ authors:
- Ddigles
- Mkutmon
- Eweitz
citedin:
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: Iron is nessisary for all mammalian cells but is also toxic in excess.
This pathway shows the regulation of iron between a cell and the blood stream.
last-edited: 2023-04-28
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3 changes: 3 additions & 0 deletions pathways/WP163/WP163.md
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Expand Up @@ -22,6 +22,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: The contents of this pathway represents the ribosomal proteins involved
in translation.
last-edited: 2021-05-16
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3 changes: 3 additions & 0 deletions pathways/WP164/WP164.md
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Expand Up @@ -14,6 +14,9 @@ citedin:
- link: PMC5005393
title: New insights in Rett syndrome using pathway analysis for transcriptomics
data (2016)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: ''
last-edited: 2019-09-17
organisms:
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3 changes: 3 additions & 0 deletions pathways/WP1770/WP1770.md
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Expand Up @@ -19,6 +19,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: This pathway shows the carbon metabolism over grey and related pathways
around it. Source [http://www.genome.jp/kegg-bin/show_pathway?org_name=mmu&mapno=00270&mapscale=&show_description=hide]
last-edited: 2021-05-08
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3 changes: 3 additions & 0 deletions pathways/WP2316/WP2316.md
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Expand Up @@ -39,6 +39,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: 'Peroxisome proliferator-activated receptors (PPARs) are nuclear hormone
receptors that are activated by fatty acids and their derivatives. PPAR has three
subtypes (PPARalpha, beta/delta, and gamma) showing different expression patterns
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3 changes: 3 additions & 0 deletions pathways/WP2318/WP2318.md
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Expand Up @@ -17,6 +17,9 @@ citedin:
- link: PMC7650246
title: Bioenergetic defects in muscle fibers of RYR1 mutant knock-in mice associated
with malignant hyperthermia (2020)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: ''
last-edited: 2019-09-17
organisms:
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3 changes: 3 additions & 0 deletions pathways/WP240/WP240.md
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Expand Up @@ -18,6 +18,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: ''
last-edited: 2021-02-18
organisms:
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3 changes: 3 additions & 0 deletions pathways/WP295/WP295.md
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Expand Up @@ -36,6 +36,9 @@ citedin:
- link: PMC5312289
title: PreImplantation factor (PIF) therapy provides comprehensive protection against
radiation induced pathologies (2016)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: 'An electron transport chain(ETC) couples a chemical reaction between
an electron donor (such as NADH) and an electron acceptor (such as O2) to the transfer
of H+ ions across a membrane, through a set of mediating biochemical reactions.
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3 changes: 3 additions & 0 deletions pathways/WP307/WP307.md
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Expand Up @@ -22,6 +22,9 @@ citedin:
disease genotype/phenotype analysis of post-MI myocardial regeneration response
induced by CABG/CD133+ bone marrow hematopoietic stem cell treatment in RCT PERFECT
Phase 3 (2020)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: ''
last-edited: 2021-05-23
organisms:
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3 changes: 3 additions & 0 deletions pathways/WP33/WP33.md
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Expand Up @@ -15,6 +15,9 @@ citedin:
- link: PMC5075206
title: Hepatic transcriptome implications for palm fruit juice deterrence of type
2 diabetes mellitus in young male Nile rats (2016)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
communities: []
description: ''
last-edited: 2024-01-21
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5 changes: 4 additions & 1 deletion pathways/WP386/WP386.md
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Expand Up @@ -12,7 +12,10 @@ authors:
- Cizar
- Egonw
- Eweitz
citedin: ''
citedin:
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
communities: []
description: ''
last-edited: 2024-07-22
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3 changes: 3 additions & 0 deletions pathways/WP401/WP401.md
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Expand Up @@ -15,6 +15,9 @@ citedin:
- link: PMC7650246
title: Bioenergetic defects in muscle fibers of RYR1 mutant knock-in mice associated
with malignant hyperthermia (2020)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: ''
last-edited: 2021-05-23
organisms:
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4 changes: 4 additions & 0 deletions pathways/WP412/WP412.md
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Expand Up @@ -12,6 +12,10 @@ authors:
- Ddigles
- Mkutmon
- Eweitz
citedin:
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: ''
last-edited: 2021-05-16
organisms:
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3 changes: 3 additions & 0 deletions pathways/WP434/WP434.md
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Expand Up @@ -24,6 +24,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: The [[wikipedia:citric_acid_cycle|citric acid cycle]], also known as
the tricarboxylic acid cycle (TCA cycle) or the Krebs cycle, (or rarely, the Szent-Gyorgyi-Krebs
cycle) is a series of enzyme-catalysed chemical reactions of central importance
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3 changes: 3 additions & 0 deletions pathways/WP488/WP488.md
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Expand Up @@ -18,6 +18,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: 'Integrins are cell surface heterodimeric protein complex consisting
of one alpha and one beta chain. Integrins act as cell adhesion molecules as well
as participate in cellular signaling. The ligands of the alpha6 beta4 integrin are
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3 changes: 3 additions & 0 deletions pathways/WP544/WP544.md
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Expand Up @@ -28,6 +28,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: 'Time- and exercise-dependent gene regulation in human skeletal muscle,
http://genomebiology.com/2003/4/10/R61 Mouse genes regulated in the diurnal (inferred
from human) and compared with mouse genes that display circadian regulation in mouse
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3 changes: 3 additions & 0 deletions pathways/WP662/WP662.md
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Expand Up @@ -17,6 +17,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: A complete overview of the metabolism of all 20 amino acids
last-edited: 2021-05-14
organisms:
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3 changes: 3 additions & 0 deletions pathways/WP730/WP730.md
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Expand Up @@ -26,6 +26,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
description: 'This pathway provides a combined view on the one-carbon and glutathione
metabolism pathways. Based on existing pathways: * [[Pathway:WP435|WP435]] * [[Pathway:WP164|WP164]]'
last-edited: 2021-05-08
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3 changes: 3 additions & 0 deletions pathways/WP79/WP79.md
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Expand Up @@ -23,6 +23,9 @@ citedin:
- link: 10.1038/mtm.2014.7
title: Proteomic profiling of salivary gland after nonviral gene transfer mediated
by conventional plasmids and minicircles (2014)
- link: 10.1038/s41467-024-52306-5
title: Podocyte-specific KLF6 primes proximal tubule CaMK1D signaling to attenuate
diabetic kidney disease (2024)
communities: []
description: This pathway describes the metabolism of tryptophan, an essential amino
acid. Originally converted from rat to human using ortholog information. Edited
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