Weekly fetch of WPID citations #39
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Weekly fetch of WPID citations | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 0 * * 0" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| fetch-pmc: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| fetch-depth: 0 | |
| ref: main | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Install packages | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-openssl-dev | |
| Rscript -e 'install.packages(c("utils","httr","xml2","dplyr","magrittr","RJSONIO","yaml","rvest"))' | |
| - name: Run citedin_lookup.R | |
| run: | | |
| Rscript -e "source('scripts/citedin_lookup.R')" | |
| - name: Commit to inbox | |
| uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_message: new content from pmc |