Weekly fetch of WPID citations #37
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| name: Weekly fetch of WPID citations | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 0 * * 0" | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| fetch-pmc: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: true | |
| fetch-depth: 0 | |
| ref: main | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Install packages | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-openssl-dev | |
| Rscript -e 'install.packages(c("utils","httr","xml2","dplyr","magrittr","RJSONIO","yaml","rvest"))' | |
| - name: Run citedin_lookup.R | |
| run: | | |
| Rscript -e "source('scripts/citedin_lookup.R')" | |
| - name: Commit to inbox | |
| uses: stefanzweifel/git-auto-commit-action@v4 | |
| with: | |
| commit_message: new content from pmc |