Daily sync of GPML from classic site #728
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| name: Daily sync of GPML from classic site | |
| on: | |
| workflow_dispatch: | |
| schedule: | |
| - cron: "0 2 * * *" | |
| env: | |
| SYNC_ACTION_VERSION: 2.1 | |
| SYNC_ACTION_JAR: SyncAction-${SYNC_ACTION_VERSION}.jar | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.ref }} | |
| cancel-in-progress: true # to cancel a run if another is triggered | |
| jobs: | |
| classic-sync: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout wikipathways-database repo | |
| uses: actions/checkout@v4 | |
| with: | |
| persist-credentials: false | |
| token: ${{ secrets.PICOPAT }} | |
| fetch-depth: 0 | |
| ref: main | |
| - name: Setup Java | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '8' | |
| - name: Cache gpml-sync-action | |
| uses: actions/cache@v4 | |
| id: cacheSyncJar | |
| with: | |
| path: ./$SYNC_ACTION_JAR | |
| key: cached-gpml-sync-action-${{ hashFiles('$SYNC_ACTION_JAR') }} | |
| restore-keys: | | |
| cached-gpml-sync-action-${{ hashFiles('$SYNC_ACTION_JAR') }} | |
| cached-gpml-sync-action- | |
| - if: steps.cacheSyncJar.outputs.cache-hit != 'true' | |
| name: Install jar | |
| run: | | |
| echo "Cache for $SYNC_ACTION_JAR not found: cached-gpml-sync-action" | |
| if [ ! -e ./$SYNC_ACTION_JAR ]; then | |
| wget -O $SYNC_ACTION_JAR https://github.com/wikipathways/gpml-sync-action/releases/download/v${SYNC_ACTION_VERSION}/SyncAction.jar | |
| fi | |
| - name: Run SyncAction | |
| run: | | |
| chmod 777 $SYNC_ACTION_JAR | |
| SyncDate=$(date --utc +%Y%m%d%H%M%S -d "1 day ago") | |
| echo $SyncDate | |
| java -jar $SYNC_ACTION_JAR $SyncDate | |
| - name: Commit report | |
| run: | | |
| git config --global user.name 'GitHub Action' | |
| git config --global user.email '[email protected]' | |
| git add pathways/WP*/WP*.gpml | |
| if git diff --exit-code --staged; then | |
| echo "No changes" | |
| else | |
| git commit -m 'Process GPML changes' | |
| git pull --rebase | |
| fi | |
| - name: Push as user | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.PICOPAT}} |