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New validation results
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egonw committed Nov 16, 2024
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4 changes: 2 additions & 2 deletions index2.md

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1 change: 1 addition & 0 deletions pathways.txt
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Expand Up @@ -1761,6 +1761,7 @@ WP5485
WP5488
WP5489
WP548
WP5490
WP5491
WP5492
WP5494
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6 changes: 3 additions & 3 deletions reports/WP5215.md
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The following DataNodes have no identifier: 3

* [http://classic.wikipathways.org/instance/WP5215_r135288](http://classic.wikipathways.org/instance/WP5215_r135288) http://rdf.wikipathways.org/Pathway/WP5215_r135288/DataNode/aaf6e (Androgen
* [http://classic.wikipathways.org/instance/WP5215_r135833](http://classic.wikipathways.org/instance/WP5215_r135833) http://rdf.wikipathways.org/Pathway/WP5215_r135833/DataNode/aaf6e (Androgen
agonists)
* [http://classic.wikipathways.org/instance/WP5215_r135288](http://classic.wikipathways.org/instance/WP5215_r135288) http://rdf.wikipathways.org/Pathway/WP5215_r135288/DataNode/c5de7 (MK2206)
* [http://classic.wikipathways.org/instance/WP5215_r135288](http://classic.wikipathways.org/instance/WP5215_r135288) http://rdf.wikipathways.org/Pathway/WP5215_r135288/DataNode/f049f (PARP
* [http://classic.wikipathways.org/instance/WP5215_r135833](http://classic.wikipathways.org/instance/WP5215_r135833) http://rdf.wikipathways.org/Pathway/WP5215_r135833/DataNode/c5de7 (MK2206)
* [http://classic.wikipathways.org/instance/WP5215_r135833](http://classic.wikipathways.org/instance/WP5215_r135833) http://rdf.wikipathways.org/Pathway/WP5215_r135833/DataNode/f049f (PARP
inhibitors)


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6 changes: 6 additions & 0 deletions reports/WP5490.json
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{
"schemaVersion": 1,
"label": "curation",
"message": "2 issues",
"color": "yellow"
}
77 changes: 77 additions & 0 deletions reports/WP5490.md
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<img style="float: right; width: 200px" src="https://upload.wikimedia.org/wikipedia/commons/thumb/8/83/Wplogo_with_text_500.png/640px-Wplogo_with_text_500.png" />
# WikiPathways WP5490

* WikiPathways: [WP5490](https://wikipathways.org/pathways/WP5490) ([classic](https://classic.wikipathways.org/instance/WP5490))
* Species: Homo sapiens
* Scholia: [WP5490](https://scholia.toolforge.org/wikipathways/WP5490)
## Tests
* CASMetabolitesTests: all 2 tests OK!
* ChEBIMetabolitesTests: all 5 tests OK!
* ChemSpiderTests: all 2 tests OK!
* DataNodesTests
* dataNodesWithoutIdentifier: .x we found 1 problem(s):
* [The following DataNodes have no identifier: 1](#d2d32fa0)
* unknownTypes_knownDatasource: .. all OK!
* unknownTypes: .. all OK!
* unknownTypes_Reactome: .. all OK!
* otherDataSource: .. all OK!
* EnsemblTests: all 4 tests OK!
* GeneTests: all 4 tests OK!
* GeneralTests: all 15 tests OK!
* HMDBSecMetabolitesTests: all 3 tests OK!
* InteractionTests
* noMetaboliteToNonMetaboliteConversions: .. all OK!
* noNonMetaboliteToMetaboliteConversions: .. all OK!
* noGeneProteinConversions: .. all OK!
* nonNumericIDs: .. all OK!
* interactionsWithLabels: .x we found 1 problem(s):
* [Interactions found that involve Labels: 2](#630d2679)
* possibleTranslocations: .. all OK!
* noProteinProteinConversions: .. all OK!
* incorrectKEGGIdentifiers: .. all OK!
* KEGGMetaboliteTests: all 2 tests OK!
* LIPIDMAPSTests: all 1 tests OK!
* MetaboliteStructureTests: all 1 tests OK!
* MetabolitesTests: all 14 tests OK!
* OudatedDataSourcesTests: all 24 tests OK!
* PathwayTests: all 7 tests OK!
* ProteinsTests: all 2 tests OK!
* PubChemMetabolitesTests: all 3 tests OK!
* ReferencesTests: all 6 tests OK!
* UniProtTests: all 5 tests OK!
* WikidataTests: all 4 tests OK!


## Summary

* Number of test classes: 20
* Number of tests: 117
* Number of assertions: 235
* Number of fails: 2

## Fails

<a name="d2d32fa0" />

## Data nodes without an identifier

The following DataNodes have no identifier: 1

* [http://classic.wikipathways.org/instance/WP5490_r135838](http://classic.wikipathways.org/instance/WP5490_r135838) http://rdf.wikipathways.org/Pathway/WP5490_r135838/DataNode/bf137 (Darovasertib)


More details at [https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier](https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier)

<a name="630d2679" />

## InteractionTests.interactionsWithLabels

Interactions found that involve Labels: 2
```
http://classic.wikipathways.org/instance/WP5490_r135838 "Aberrant cell growth
Survival
Cancer" with graphId a78c1
http://classic.wikipathways.org/instance/WP5490_r135838 "Cell death
Tumor regression" with graphId a86a3
```

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