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@tompollard
tompollard committed Jul 11, 2022
1 parent f3cd2cb commit 4774bbf
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4,160 changes: 2,149 additions & 2,011 deletions _sources/tutorial/notebooks/pulse-wave-analysis.ipynb
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9 changes: 5 additions & 4 deletions reports/pulse-wave-analysis.log
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Expand Up @@ -19,17 +19,18 @@ nbclient.exceptions.CellExecutionError: An error occurred while executing the fo
------------------
temp_fs = 125
alg = 'd2max'
ibis = pulse_detect(ppg_filt,temp_fs,5,alg)
print("Detected {} beats in the PPG signal using the {} algorithm".format(len(ibis), alg))
ibis = pulse_detect(ppg_filt, temp_fs, 5, alg)

print(f"Detected {len(ibis)} beats in the PPG signal using the {alg} algorithm")
------------------

---------------------------------------------------------------------------
NameError Traceback (most recent call last)
Input In [5], in <cell line: 3>()
 1 temp_fs = 125
 2 alg = 'd2max'
----> 3 ibis = pulse_detect(ppg_filt,temp_fs,5,alg)
 4 print("Detected {} beats in the PPG signal using the {} algorithm".format(len(ibis), alg))
----> 3 ibis = pulse_detect(ppg_filt, temp_fs, 5, alg)
 5 print(f"Detected {len(ibis)} beats in the PPG signal using the {alg} algorithm")

NameError: name 'pulse_detect' is not defined
NameError: name 'pulse_detect' is not defined
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2 changes: 1 addition & 1 deletion searchindex.js
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37 changes: 18 additions & 19 deletions tutorial/notebooks/beat-detection.html
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Expand Up @@ -694,43 +694,42 @@ <h2>Setup<a class="headerlink" href="#setup" title="Permalink to this headline">
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> Downloading wfdb-4.0.0-py3-none-any.whl (161 kB)
?25l ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ <span class=" -Color -Color-Green">0.0/161.7 kB</span> <span class=" -Color -Color-Red">?</span> eta <span class=" -Color -Color-Cyan">-:--:--</span>
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ <span class=" -Color -Color-Green">161.7/161.7 kB</span> <span class=" -Color -Color-Red">7.7 MB/s</span> eta <span class=" -Color -Color-Cyan">0:00:00</span>
?25hRequirement already satisfied: numpy&lt;2.0.0,&gt;=1.10.1 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from wfdb==4.0.0) (1.23.1)
Requirement already satisfied: requests&lt;3.0.0,&gt;=2.8.1 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from wfdb==4.0.0) (2.28.1)
Requirement already satisfied: scipy&lt;2.0.0,&gt;=1.0.0 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from wfdb==4.0.0) (1.8.1)
Requirement already satisfied: matplotlib&lt;4.0.0,&gt;=3.2.2 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from wfdb==4.0.0) (3.5.2)
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Collecting SoundFile&lt;0.12.0,&gt;=0.10.0
Downloading SoundFile-0.10.3.post1-py2.py3-none-any.whl (21 kB)
Requirement already satisfied: scipy&lt;2.0.0,&gt;=1.0.0 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from wfdb==4.0.0) (1.8.1)
Requirement already satisfied: numpy&lt;2.0.0,&gt;=1.10.1 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from wfdb==4.0.0) (1.23.1)
Requirement already satisfied: requests&lt;3.0.0,&gt;=2.8.1 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from wfdb==4.0.0) (2.28.1)
Requirement already satisfied: pandas&lt;2.0.0,&gt;=1.0.0 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from wfdb==4.0.0) (1.4.3)
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Requirement already satisfied: python-dateutil&gt;=2.7 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (2.8.2)
Requirement already satisfied: matplotlib&lt;4.0.0,&gt;=3.2.2 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from wfdb==4.0.0) (3.5.2)
Requirement already satisfied: python-dateutil&gt;=2.7 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (2.8.2)
Requirement already satisfied: pillow&gt;=6.2.0 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (9.2.0)
Requirement already satisfied: pyparsing&gt;=2.2.1 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (3.0.9)
Requirement already satisfied: cycler&gt;=0.10 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (0.11.0)
Requirement already satisfied: packaging&gt;=20.0 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (21.3)
Requirement already satisfied: fonttools&gt;=4.22.0 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (4.34.4)
Requirement already satisfied: packaging&gt;=20.0 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (21.3)
Requirement already satisfied: pyparsing&gt;=2.2.1 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (3.0.9)
Requirement already satisfied: kiwisolver&gt;=1.0.1 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (1.4.3)
Requirement already satisfied: pytz&gt;=2020.1 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from pandas&lt;2.0.0,&gt;=1.0.0-&gt;wfdb==4.0.0) (2022.1)
Requirement already satisfied: cycler&gt;=0.10 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (0.11.0)
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Requirement already satisfied: pytz&gt;=2020.1 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from pandas&lt;2.0.0,&gt;=1.0.0-&gt;wfdb==4.0.0) (2022.1)
Requirement already satisfied: idna&lt;4,&gt;=2.5 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from requests&lt;3.0.0,&gt;=2.8.1-&gt;wfdb==4.0.0) (3.3)
Requirement already satisfied: urllib3&lt;1.27,&gt;=1.21.1 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from requests&lt;3.0.0,&gt;=2.8.1-&gt;wfdb==4.0.0) (1.26.10)
Requirement already satisfied: certifi&gt;=2017.4.17 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from requests&lt;3.0.0,&gt;=2.8.1-&gt;wfdb==4.0.0) (2022.6.15)
Requirement already satisfied: charset-normalizer&lt;3,&gt;=2 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from requests&lt;3.0.0,&gt;=2.8.1-&gt;wfdb==4.0.0) (2.1.0)
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Requirement already satisfied: cffi&gt;=1.0 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from SoundFile&lt;0.12.0,&gt;=0.10.0-&gt;wfdb==4.0.0) (1.15.1)
Requirement already satisfied: urllib3&lt;1.27,&gt;=1.21.1 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from requests&lt;3.0.0,&gt;=2.8.1-&gt;wfdb==4.0.0) (1.26.10)
Requirement already satisfied: cffi&gt;=1.0 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from SoundFile&lt;0.12.0,&gt;=0.10.0-&gt;wfdb==4.0.0) (1.15.1)
Requirement already satisfied: pycparser in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from cffi&gt;=1.0-&gt;SoundFile&lt;0.12.0,&gt;=0.10.0-&gt;wfdb==4.0.0) (2.21)
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Requirement already satisfied: six&gt;=1.5 in /opt/hostedtoolcache/Python/3.9.13/x64/lib/python3.9/site-packages (from python-dateutil&gt;=2.7-&gt;matplotlib&lt;4.0.0,&gt;=3.2.2-&gt;wfdb==4.0.0) (1.16.0)
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span>Installing collected packages: SoundFile, wfdb
Attempting uninstall: wfdb
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<div class="output stream highlight-myst-ansi notranslate"><div class="highlight"><pre><span></span> Attempting uninstall: wfdb
Found existing installation: wfdb 3.4.1
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