Add all need libraries.

watronfire · Jan 7, 2025 · efb0de2 · efb0de2
1 parent 9ca9bac
commit efb0de2
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Showing 3 changed files with 4 additions and 3 deletions.
diff --git a/.dockerignore b/.dockerignore
@@ -12,5 +12,4 @@ vibecheck.egg-info/
 .gitattributes
 .gitignore
 Dockerfile
-environment.yaml
 test_environment.yaml
diff --git a/Dockerfile b/Dockerfile
@@ -12,13 +12,14 @@ LABEL license.url="https://github.com/watronfire/Vibecheck/blob/main/LICENSE"
 LABEL maintainer="Nathaniel L. Matteson"
 LABEL maintainer.email="[email protected]"
 
+WORKDIR /home/mambauser/
 COPY --chown=$MAMBA_USER:$MAMBA_USER . ./vibecheck/
-WORKDIR /vibecheck/
+WORKDIR /home/mambauser/vibecheck/
 
 RUN micromamba install -y -n base -f environment.yaml \
     && micromamba clean --all --yes
 # Specify path to gain access to conda environment without terminal model
-ENV PATH="/opt/conda/envs/vibecheck/bin:/opt/conda/bin:/opt/conda/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin"
+ENV PATH="/opt/conda/envs/base/bin:/opt/conda/bin:/opt/conda/condabin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin"
 
 RUN pip install .
 RUN vibecheck -v

diff --git a/environment.yaml b/environment.yaml
@@ -10,3 +10,4 @@ dependencies:
   - snakemake-minimal
   - rich
   - gofasta
+  - pandas
-Original file line number
+Diff line change
@@ Expand Up / @@ -10,3 +10,4 @@ dependencies: @@
       - snakemake-minimal
       - rich
       - gofasta
+      - pandas