added publications citing WanierBerri

.github/workflows/documentation.yaml

@@ -10,10 +10,11 @@ jobs:
       - uses: actions/setup-python@v3
       - name: Install dependencies
         run: |
-          pip install sphinx sphinx_rtd_theme sphinx-pyreverse sphinx_sitemap
+          pip install sphinx sphinx_rtd_theme sphinx-pyreverse sphinx_sitemap sphinxcontrib-bibtex
       - name: Sphinx build
         run: |
           sphinx-build source _build
+          cp CNAME _build
       - name: Deploy
         uses: peaceiris/actions-gh-pages@v3
         if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/master' }}

source/bibstyle.py

@@ -0,0 +1,56 @@
+from __future__ import unicode_literals
+from pybtex.style.formatting.unsrt import Style as UnsrtStyle
+from pybtex.style.formatting import BaseStyle, toplevel
+from pybtex.style.formatting.unsrt import pages, date
+from pybtex.style.template import (
+    field, first_of, href, join, names, optional, optional_field, sentence,
+    tag, together, words
+)
+#from pybtex.style.template import toplevel # ... and anything else needed
+
+
+from pybtex.style.sorting.author_year_title import SortingStyle
+
+class MySortingStyle(SortingStyle):
+
+    def sorting_key(self, entry):
+        if entry.type in ('book', 'inbook'):
+            author_key = self.author_editor_key(entry)
+        elif 'author' in entry.persons:
+            author_key = self.persons_key(entry.persons['author'])
+        else:
+            author_key = ''
+        return (entry.fields.get('year', ''), author_key, entry.fields.get('title', ''))
+
+
+import pybtex.plugin
+pybtex.plugin.register_plugin('pybtex.style.sorting', 'year_author_title', MySortingStyle)
+
+class MyStyle(UnsrtStyle):
+
+    default_sorting_style = 'year_author_title'
+
+    def get_article_template(self, e):
+        volume_and_pages = first_of [
+            # volume and pages, with optional issue number
+            optional [
+                join [
+                    field('volume'),
+                    optional['(', field('number'),')'],
+                    ':', pages
+                ],
+            ],
+            # pages only
+            words ['pages', pages],
+        ]
+        template = toplevel [
+            self.format_names('author'),
+            self.format_title(e, 'title'),
+            sentence [
+                tag('strong') [field('journal')],
+                optional[ volume_and_pages ],
+                tag('strong') [date]],
+            sentence [ optional_field('note') ],
+            self.format_web_refs(e),
+        ]
+        return template

source/citing-wb.bib

@@ -0,0 +1,58 @@
+@ARTICLE{Xiao2021283,
+author={Xiao, J. and Yan, B.},
+title={First-principles calculations for topological quantum materials},
+journal={Nature Reviews Physics},
+year={2021},
+volume={3},
+number={4},
+pages={283-297},
+doi={10.1038/s42254-021-00292-8},
+abstract={Discoveries of topological states and topological materials have reshaped our understanding of physics and materials over the past 15 years. First-principles calculations have had an important role in bridging the theory of topology and experiments by predicting realistic topological materials. In this Review, we offer an overview of the first-principles methodology on topological quantum materials. First, we unify different concepts of topological states in the same band inversion scenario. We then discuss the topology using first-principles band structures and newly established topological materials databases. We stress challenges in characterizing symmetry-independent Weyl semimetals and calculating topological surface states, closing with an outlook on the exciting transport and optical phenomena induced by the topology. © 2021, Springer Nature Limited.},
+keywords={Calculations, Band inversion;  First principles;  First-principles calculation;  Optical phenomena;  Topological materials;  Topological state, Topology},
+publisher={Springer Nature},
+}
+
+@ARTICLE{Kaye2023,
+author={Kaye, J. and Beck, S. and Barnett, A. and Van Muñoz, L. and Parcollet, O.},
+title={Automatic, high-order, and adaptive algorithms for Brillouin zone integration},
+journal={SciPost Physics},
+year={2023},
+volume={15},
+number={2},
+doi={10.21468/SciPostPhys.15.2.062},
+art_number={062},
+abstract={We present efficient methods for Brillouin zone integration with a non-zero but possibly very small broadening factor η, focusing on cases in which downfolded Hamiltonians can be evaluated efficiently using Wannier interpolation. We describe robust, high-order accurate algorithms automating convergence to a user-specified error tolerance ϵ, emphasizing an efficient computational scaling with respect to η. After analyzing the standard equispaced integration method, applicable in the case of large broadening, we describe a simple iterated adaptive integration algorithm effective in the small η regime. Its computational cost scales as O(log3(η-1)) as η → 0+ in three dimensions, as opposed to O(η-3) for equispaced integration. We argue that, by contrast, tree-based adaptive integration methods scale only as O(log(η-1)/η2) for typical Brillouin zone integrals. In addition to its favorable scaling, the iterated adaptive algorithm is straightforward to implement, particularly for integration on the irreducible Brillouin zone, for which it avoids the tetrahedral meshes required for tree-based schemes. We illustrate the algorithms by calculating the spectral function of SrVO3 with broadening on the meV scale. © 2023 Society for Horticultural Science. All rights reserved.},
+publisher={SciPost Foundation},
+}
+
+@ARTICLE{Wu2022,
+author={Wu, X.-Y. and Liang, H. and Kong, X.-S. and Gong, Q. and Peng, L.-Y.},
+title={Multiscale numerical tool for studying nonlinear dynamics in solids induced by strong laser pulses},
+journal={Physical Review E},
+year={2022},
+volume={105},
+number={5},
+doi={10.1103/PhysRevE.105.055306},
+art_number={055306},
+abstract={Strong-field phenomena in solids exhibit extreme high-order nonlinear optical effects, which have triggered many theoretical and experimental investigations. However, there is still a lack of highly efficient numerical tools to simulate the relevant phenomena. In this paper, a versatile multiscale numerical tool set is developed for studying high-order nonlinear optical effects in solids, generated by ultrafast strong laser pulses. This tool is based on the tight-binding model approximation of the crystal structure, the related parameters of which are obtained from the density functional theory calculations. And the nonlinear effects are explored by solving the Maxwell equations coupled with the semiconductor Bloch equations. Our numerical tool can provide not only basic electronic structures and optical responses of the crystal, but also the real-time evolution of the macroscopic electromagnetic fields and the current density. The high-performance parallel computing and the interpolation method in our tool make it possible to study the strong-field nonlinear responses and propagation effects on a large spatial and temporal scale. Finally, three theoretical or experimental results published recently are satisfactorily reproduced, showing a good performance of the current toolbox. © 2022 American Physical Society.},
+keywords={Computation theory;  Crystal structure;  Density functional theory;  Electromagnetic fields;  Electronic structure;  Laser pulses;  Nonlinear equations;  Nonlinear optics, Experimental investigations;  High-order;  Higher-order;  Numerical tools;  Order nonlinear optical effects;  Strong field;  Theoretical investigations;  Tight-binding modeling;  Toolsets;  Ultra-fast, Maxwell equations},
+publisher={American Physical Society},
+}
+
+
+@phdthesis{samathrakis2022topological,
+  title={Topological transport properties of ferromagnetic and antiferromagnetic materials},
+  author={Samathrakis, Ilias},
+  year={2022},
+  school={Dissertation, Darmstadt, Technische Universit{\"a}t Darmstadt, 2022}
+}
+
+
+@phdthesis{oiwa2023generation,
+  title={Generation Scheme of Effective Models Based on Symmetry-Adapted Multipole Basis and Clarification for Universal Properties of Chiral Materials},
+  author={OIWA, RIKUTO},
+  year={2023},
+  school={明治大学},
+  url={https://meiji.repo.nii.ac.jp/record/17719/files/oiwa_2023_rikou.pdf}
+}
+

source/conf.py

@@ -33,9 +33,26 @@
 extensions = [
     'sphinx.ext.autodoc', 'sphinx.ext.mathjax', 'sphinx.ext.intersphinx',
     'sphinx.ext.viewcode', 'sphinx_pyreverse' , 'sphinx_sitemap' , 'sphinx.ext.napoleon',
+    'sphinxcontrib.bibtex'
 #    'nbsphinx',
 ]
 
+#latex_elements = {
+# 'preamble': r'''
+#     \usepackage{hyperref,doi}
+# '''
+#}
+
+import sys
+import os
+sys.path.append(os.path.join(os.path.dirname(__file__), '.'))
+from bibstyle import MyStyle
+import pybtex.plugin
+pybtex.plugin.register_plugin('pybtex.style.formatting', 'mystyle', MyStyle)
+bibtex_bibfiles = ['citing-wb.bib', 'using-wb.bib', 'using-wb-tmp.bib']
+bibtex_default_style = 'mystyle'
+#bibtex_default_style = 'unsrt'
+#bibtex_encoding = 'latin'
 
 html_baseurl = 'https://wannier-berri.org'
 # Add any paths that contain templates here, relative to this directory.

source/index.rst

@@ -128,7 +128,7 @@ are encouraged to be submitted via pull request to the
    exampleFe
    timing
    people
-   citations
+   publications
 
 
 .. |NEW| image:: imag/NEW.jpg

source/publications.rst

@@ -0,0 +1,21 @@
+.. _sec-citations:
+
+***********************************
+Publications using WannierBerri
+***********************************
+
+Publications doing calculations with WannierBerri
+---------------------------------------------------
+
+.. bibliography:: using-wb.bib using-wb-tmp.bib
+   :all:   
+
+Publications just citing WannierBerri
+---------------------------------------
+
+:cite:empty:`Xiao2021283,Wu2022,samathrakis2022topological,Kaye2023,oiwa2023generation`
+
+.. bibliography:: citing-wb.bib
+   :labelprefix: '
+
+

source/using-wb-tmp.bib

@@ -0,0 +1,48 @@
+
+@misc{liu2023covariant,
+      title={Covariant derivatives of Berry-type quantities: Application to nonlinear transport}, 
+      author={Xiaoxiong Liu and Stepan S. Tsirkin and Ivo Souza},
+      year={2023},
+      eprint={2303.10129},
+      archivePrefix={arXiv},
+      primaryClass={cond-mat.mtrl-sci}
+}
+
+
+@misc{liu2023electrical,
+      title={Electrical magnetochiral anisotropy in trigonal tellurium from first principles}, 
+      author={Xiaoxiong Liu and Ivo Souza and Stepan S. Tsirkin},
+      year={2023},
+      eprint={2303.10164},
+      archivePrefix={arXiv},
+      primaryClass={cond-mat.mtrl-sci}
+}
+
+
+@misc{bandyopadhyay2023berry,
+      title={Berry Curvature Dipole and its Strain Engineering in Layered Phosphorene}, 
+      author={Arka Bandyopadhyay and Nesta Benno Joseph and Awadhesh Narayan},
+      year={2023},
+      eprint={2310.20543},
+      archivePrefix={arXiv},
+      primaryClass={cond-mat.mes-hall}
+}
+
+@misc{gupta2023self,
+      title={{Self-induced inverse spin Hall effect in La$_{0.67}$Sr$_{0.33}$MnO$_{3}$ films}},
+      author={Pushpendra Gupta and In Jun Park and Anupama Swain and Abhisek Mishra and Vivek P. Amin and Subhankar Bedanta},
+      year={2023},
+      eprint={2310.06967},
+      archivePrefix={arXiv},
+      primaryClass={physics.app-ph}
+}
+
+@misc{tyner2023solitons,
+      title={Solitons and real-space screening of bulk topology of quantum materials}, 
+      author={Alexander C. Tyner and Pallab Goswami},
+      year={2023},
+      eprint={2304.05424},
+      archivePrefix={arXiv},
+      primaryClass={cond-mat.mtrl-sci}
+}
+