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environment.yml
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environment.yml
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name: tbrucei-gcn
channels:
- r
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _r-mutex=1.0.0=anacondar_1
- binutils_impl_linux-64=2.33.1=he6710b0_7
- binutils_linux-64=2.33.1=h9595d00_15
- bioconductor-annotate=1.64.0=r36_0
- bioconductor-annotationdbi=1.48.0=r36_0
- bioconductor-biobase=2.46.0=r36h516909a_0
- bioconductor-biocgenerics=0.32.0=r36_0
- bioconductor-dupradar=1.16.0=r36_0
- bioconductor-edger=3.14.0=0
- bioconductor-genefilter=1.68.0=r36hc99cbb1_0
- bioconductor-iranges=2.20.0=r36h516909a_0
- bioconductor-limma=3.42.0=r36h516909a_0
- bioconductor-rsubread=2.0.0=r36h516909a_0
- bioconductor-s4vectors=0.24.0=r36h516909a_0
- bioconductor-sva=3.18.0=0
- blas=1.0=mkl
- bwidget=1.9.11=1
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2020.6.20=hecda079_0
- cairo=1.14.12=h8948797_3
- certifi=2020.6.20=py37he5f6b98_2
- curl=7.69.1=hbc83047_0
- cycler=0.10.0=py37_0
- dbus=1.13.18=hb2f20db_0
- expat=2.2.10=he6710b0_2
- fastqc=0.11.8=2
- font-ttf-dejavu-sans-mono=2.37=h6964260_0
- fontconfig=2.13.0=h9420a91_0
- freetype=2.10.4=h5ab3b9f_0
- fribidi=1.0.10=h7b6447c_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_15
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_15
- glib=2.66.1=h92f7085_0
- graphite2=1.3.14=h23475e2_0
- gsl=2.4=h14c3975_4
- gst-plugins-base=1.14.0=hbbd80ab_1
- gstreamer=1.14.0=hb31296c_0
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_15
- harfbuzz=2.4.0=hca77d97_1
- hisat2=2.1.0=py37hc9558a2_4
- htseq=0.11.2=py37h637b7d7_1
- icu=58.2=he6710b0_3
- intel-openmp=2020.2=254
- jpeg=9b=h024ee3a_2
- kiwisolver=1.3.0=py37h2531618_0
- krb5=1.17.1=h173b8e3_0
- lcms2=2.11=h396b838_0
- ld_impl_linux-64=2.33.1=h53a641e_7
- libcurl=7.69.1=h20c2e04_0
- libdeflate=1.0=h14c3975_1
- libedit=3.1.20191231=h14c3975_1
- libffi=3.3=he6710b0_2
- libgcc-ng=9.1.0=hdf63c60_0
- libgfortran-ng=7.3.0=hdf63c60_0
- libpng=1.6.37=hbc83047_0
- libssh2=1.9.0=h1ba5d50_1
- libstdcxx-ng=9.1.0=hdf63c60_0
- libtiff=4.1.0=h2733197_1
- libuuid=1.0.3=h1bed415_2
- libxcb=1.14=h7b6447c_0
- libxml2=2.9.10=hb55368b_3
- lz4-c=1.9.2=heb0550a_3
- make=4.2.1=h1bed415_1
- matplotlib=3.3.2=0
- matplotlib-base=3.3.2=py37h817c723_0
- mkl=2020.2=256
- mkl-service=2.3.0=py37he904b0f_0
- mkl_fft=1.2.0=py37h23d657b_0
- mkl_random=1.1.1=py37h0573a6f_0
- ncurses=6.2=he6710b0_1
- numpy=1.19.2=py37h54aff64_0
- numpy-base=1.19.2=py37hfa32c7d_0
- olefile=0.46=py37_0
- openjdk=8.0.152=h7b6447c_3
- openssl=1.1.1h=h516909a_0
- pango=1.45.3=hd140c19_0
- pcre=8.44=he6710b0_0
- perl=5.26.2=h14c3975_0
- picard=2.20.3=0
- pillow=8.0.1=py37he98fc37_0
- pip=20.2.4=py37_0
- pixman=0.40.0=h7b6447c_0
- pyparsing=2.4.7=py_0
- pyqt=5.9.2=py37h05f1152_2
- pysam=0.15.3=py37hda2845c_1
- python=3.7.9=h7579374_0
- python-dateutil=2.8.1=py_0
- python_abi=3.7=1_cp37m
- qt=5.9.7=h5867ecd_1
- r=3.6.0=r36_0
- r-assertthat=0.2.1=r36h6115d3f_0
- r-base=3.6.1=haffb61f_2
- r-bh=1.69.0_1=r36h6115d3f_0
- r-biocmanager=1.30.10=r36h6115d3f_1
- r-bit=1.1_14=r36h96ca727_0
- r-bit64=0.9_7=r36h96ca727_0
- r-bitops=1.0_6=r36h96ca727_4
- r-blob=1.1.1=r36h6115d3f_0
- r-boot=1.3_20=r36h6115d3f_0
- r-class=7.3_15=r36h96ca727_0
- r-cluster=2.0.8=r36ha65eedd_0
- r-codetools=0.2_16=r36h6115d3f_0
- r-dbi=1.0.0=r36h6115d3f_0
- r-digest=0.6.18=r36h96ca727_0
- r-dynamictreecut=1.63_1=r36h6115d3f_0
- r-foreign=0.8_71=r36h96ca727_0
- r-kernsmooth=2.23_15=r36ha65eedd_4
- r-lattice=0.20_38=r36h96ca727_0
- r-magrittr=1.5=r36h6115d3f_4
- r-mass=7.3_51.3=r36h96ca727_0
- r-matrix=1.2_17=r36h96ca727_0
- r-memoise=1.1.0=r36h6115d3f_0
- r-mgcv=1.8_28=r36h96ca727_0
- r-nlme=3.1_139=r36ha65eedd_0
- r-nnet=7.3_12=r36h96ca727_0
- r-pkgconfig=2.0.2=r36h6115d3f_0
- r-plogr=0.2.0=r36h6115d3f_0
- r-prettyunits=1.0.2=r36h6115d3f_0
- r-rcpp=1.0.1=r36h29659fb_0
- r-rcurl=1.95_4.12=r36h96ca727_0
- r-recommended=3.6.0=r36_0
- r-rpart=4.1_15=r36h96ca727_0
- r-rsqlite=2.1.1=r36h29659fb_0
- r-spatial=7.3_11=r36h96ca727_4
- r-survival=2.44_1.1=r36h96ca727_0
- r-xml=3.98_1.19=r36h96ca727_0
- r-xtable=1.8_4=r36h6115d3f_0
- readline=8.0=h7b6447c_0
- setuptools=50.3.0=py37hb0f4dca_1
- sip=4.19.8=py37hf484d3e_0
- six=1.15.0=py_0
- sqlite=3.33.0=h62c20be_0
- tk=8.6.10=hbc83047_0
- tktable=2.10=h14c3975_0
- tornado=6.0.4=py37h7b6447c_1
- wheel=0.35.1=py_0
- xz=5.2.5=h7b6447c_0
- zlib=1.2.11=h7b6447c_3
- zstd=1.4.5=h9ceee32_0
- pip:
- argon2-cffi==20.1.0
- async-generator==1.10
- attrs==20.3.0
- backcall==0.2.0
- bleach==3.2.1
- bx-python==0.8.9
- cffi==1.14.3
- chardet==3.0.4
- click==7.1.2
- coloredlogs==14.0
- colorlover==0.3.0
- colormath==3.0.0
- cufflinks==0.17.3
- cython==0.29.21
- decorator==4.4.2
- defusedxml==0.6.0
- entrypoints==0.3
- future==0.18.2
- humanfriendly==8.2
- idna==2.10
- importlib-metadata==2.0.0
- ipykernel==5.3.4
- ipython==7.19.0
- ipython-genutils==0.2.0
- ipywidgets==7.5.1
- jedi==0.17.2
- jinja2==2.11.2
- jsonschema==3.2.0
- jupyter-client==6.1.7
- jupyter-core==4.6.3
- jupyterlab-pygments==0.1.2
- lzstring==1.0.4
- markdown==3.3.3
- markupsafe==1.1.1
- mistune==0.8.4
- multiqc==1.9
- nbclient==0.5.1
- nbconvert==6.0.7
- nbformat==5.0.8
- nest-asyncio==1.4.3
- networkx==2.5
- notebook==6.1.5
- packaging==20.4
- pandas==1.1.4
- pandocfilters==1.4.3
- parso==0.7.1
- pexpect==4.8.0
- pickleshare==0.7.5
- plotly==4.12.0
- prometheus-client==0.8.0
- prompt-toolkit==3.0.8
- ptyprocess==0.6.0
- pybigwig==0.3.17
- pycparser==2.20
- pygments==2.7.2
- pyrsistent==0.17.3
- pytz==2020.4
- pyyaml==5.3.1
- pyzmq==20.0.0
- requests==2.24.0
- retrying==1.3.3
- rseqc==4.0.0
- send2trash==1.5.0
- simplejson==3.17.2
- spectra==0.0.11
- terminado==0.9.1
- testpath==0.4.4
- traitlets==5.0.5
- urllib3==1.25.11
- wcwidth==0.2.5
- webencodings==0.5.1
- widgetsnbextension==3.5.1
- zipp==3.4.0
prefix: /home/user/anaconda3/envs/tbrucei-gcn