snpEff Project

20130521_repfilt_sam_bam.sh - Mapping MG20 accessions resequencing 20130605_map_burtti.sh - producing bam file from Burtti genomic data

Blueberry Project

20130525_gmap_454.sh - Making GMAP alignment from 454 alignment 20130605_454_GMAP_GFF3.sh - Making GMAP GFF3 from 454 alignment 20130605_bam2cuff_bb_se.sh - Making Cufflinks genemodels from the illumina data 20130616_GeneMark_Blueberry.sh - Running GeneMark for Blueberry genome