0.9.0 release #556
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| types: | |
| - opened | |
| - reopened | |
| - synchronize | |
| - closed | |
| # to be able to trigger a manual build | |
| workflow_dispatch: | |
| name: Render project | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| env: | |
| RENV_PATHS_ROOT: ~/.local/share/renv | |
| steps: | |
| # need to get more space for docker images | |
| - uses: data-intuitive/reclaim-the-bytes@v2 | |
| - uses: actions/checkout@v4 | |
| - name: Replace Docker with podman | |
| run: | | |
| echo 'shopt -s expand_aliases' >> ~/.bash_profile | |
| echo 'alias docker=podman' >> ~/.bash_profile | |
| - name: Check podman | |
| shell: bash -l {0} | |
| run: | | |
| docker -v | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: "4.4" | |
| use-public-rspm: true | |
| # - uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: "3.10" | |
| - uses: nf-core/setup-nextflow@v1 | |
| - uses: viash-io/viash-actions/setup@v5 | |
| - name: Install dependencies via renv restore | |
| run: | | |
| Rscript -e 'renv::restore()' | |
| - name: Install Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| with: | |
| tinytex: true | |
| - name: Render with Quarto | |
| shell: bash -l {0} | |
| run: | | |
| # source renv/python/virtualenvs/renv-python-3.10/bin/activate | |
| # environment variable that enables docker image pruning | |
| # between different pages to save on disk space | |
| export PRUNE_IMAGES=true | |
| quarto render | |
| - name: Add previous versions of the website to the rendered pages | |
| run: | | |
| mkdir -p ./_site/versioned | |
| find ./_versioned -name '*.tar.xz' -exec tar -Jxf {} -C ./_site/versioned/ \; | |
| - name: Deploy 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/github-pages-deploy-action@v4 | |
| with: | |
| folder: _site | |
| branch: gh-pages | |
| force: false | |
| clean-exclude: pr-preview/ | |
| - name: Deploy preview | |
| if: github.event_name == 'pull_request' | |
| uses: rossjrw/pr-preview-action@v1 | |
| with: | |
| source-dir: _site | |
| preview-branch: gh-pages | |
| umbrella-dir: pr-preview | |
| action: auto |