Code

BD rhapsody sequence analysis#96

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Merged

rcannood merged 51 commits intomainviash-hub/biobox:mainfrom bd_rhapsody_sequence_analysisviash-hub/biobox:bd_rhapsody_sequence_analysisCopy head branch name to clipboardSep 17, 2024

+2,532-172

Commits

Commits on Jul 27, 2024

• wip

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  a773d67

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Commits on Jul 28, 2024

• fix test

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  410aec5

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Commits on Jul 29, 2024

• add help

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• update 2.2 args

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  1bfd1b9

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• fix bug

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• extend test data

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• Merge remote-tracking branch 'origin/main' into bd_rhapsody_sequence_analysis

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• output separate files

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• analyse missing args

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Commits on Jul 30, 2024

• tweaks to test

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  325cef4

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• fix script

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  a261478

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• fix test

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Commits on Jul 31, 2024

• fix test

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  401e432

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• move small reference

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• wip generate wta test data

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  743fd59

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• don't forget about umi in r1

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• remove unneeded pkg

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  6a690f0

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• load reference in memory just once

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  6cb8ef1

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• fix random choices

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  8d3c473

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Commits on Aug 1, 2024

• extend test

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  3e4fd80

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• add abc immunediscoverypanel

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• wip abc testing code

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Commits on Aug 3, 2024

• fix abc test; need unique instrument, run and flowcell ids for each sample

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• add smk data

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Commits on Aug 8, 2024

• add entry to changelog

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  3c37877

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• remove old test file

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  01d4a18

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• adapt test for missing read

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• update description

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• add comment

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Commits on Aug 9, 2024

• ensure cwl files are absolute

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Commits on Aug 20, 2024

• Apply suggestions from code review

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  802d097

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• fix suggestion

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  21dfb67

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• newer pipelines have docker requirements as a hint instead of a strict requirement

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• rename str to content

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• remove deleted resources

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  bcd01e6

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• fix containers

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  8a1e1a6

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• fix script

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  db269d6

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• fix suggestion

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• fix suggestion...

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  20036f1

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• fix test

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• fix component name

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Commits on Aug 21, 2024

• Merge remote-tracking branch 'origin/main' into bd_rhapsody_sequence_analysis

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  1ef5e7e

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Commits on Aug 22, 2024

• fix test

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  d5866b5

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Commits on Sep 3, 2024

• apply suggestions

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• Merge remote-tracking branch 'origin/main' into bd_rhapsody_sequence_analysis

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  committed
  cba2a07

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• fix test

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Commits on Sep 17, 2024

• added note

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• Merge remote-tracking branch 'origin/main' into bd_rhapsody_sequence_analysis

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  587f0b3

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• fix changelog

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• fix changelog again

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  e7b9f97

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• splitting hairs here

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