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Add gffread #29

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merged 12 commits into from
Mar 21, 2024
Merged

Add gffread #29

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7f645e9
Uploading local copy
emmarousseau Mar 8, 2024
d4c42c7
Restructured directories and changed test data source and script
emmarousseau Mar 10, 2024
0eaa343
Create var/ssoftware_versions.txt
emmarousseau Mar 10, 2024
3d7ab32
moved file and added quotes to all filenames
emmarousseau Mar 10, 2024
28ee92f
Small formatting changes, add command tag to config file
emmarousseau Mar 11, 2024
f5c7216
unset flags in script.sh and fixed argument types in config
emmarousseau Mar 13, 2024
c987786
Refined tests
emmarousseau Mar 16, 2024
a875b4e
Adjust comments
emmarousseau Mar 18, 2024
60c92b2
Add changelog description, add config keyword and reorder lines
emmarousseau Mar 18, 2024
17c39a0
Resolving the suggestions for PR 29
emmarousseau Mar 20, 2024
f522635
Delete unused files
emmarousseau Mar 20, 2024
f4a05b1
Make output file argument required
emmarousseau Mar 21, 2024
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -29,6 +29,8 @@

* `star/star_align_reads`: Align reads to a reference genome (PR #22).

* `gffread`: Validate, filter, convert and perform other operations on GFF files (PR #29).

## MAJOR CHANGES

## MINOR CHANGES
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