Code

Propose changes to cutadapt#26

Code

Merged

rcannood merged 11 commits intodev/cutadaptviash-hub/biobox:dev/cutadaptfrom dev/cutadapt_prviash-hub/biobox:dev/cutadapt_prCopy head branch name to clipboardFeb 27, 2024

+284-192

Commits

Commits on Feb 22, 2024

• change multiple_sep to ';'

  rcannood

  committed
  44d98ba

• add example

  rcannood

  committed
  550d026

• simplify code with a helper function

  rcannood

  committed
  65b47de

• create directories in test

  rcannood

  committed
  2f187ce

• use a different output extension if --fasta is provided

  rcannood

  committed
  986a090

• decrease code duplication by separating optional outputs from paired/unpaired output arguments

  rcannood

  committed
  6b76604

• write custom tests for cutadapt

  rcannood

  committed
  4601f21

• fix _r2 arguments

  rcannood

  committed
  45d1989

• add debug flag as not to always print the cli command

  rcannood

  committed
  22f99c6

Commits on Feb 24, 2024

• Merge branch 'dev/cutadapt' into dev/cutadapt_pr

  rcannood

  committed
  19da124

• remove comment

  rcannood

  committed
  8370251