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Add agat sp ensembl output style #130

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@Leila011 Leila011 commented Aug 8, 2024

Description

Added agat_sp_ensembl_output_style
Added --verbose

Issue ticket number

Closes #xxxx

Checklist before requesting a review

  • I have performed a self-review of my code

  • Conforms to the Contributing guidelines

  • Proposed changes are described in the CHANGELOG.md

  • I have tested my code with viash ns test --parallel -q <name or namespace>

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Documentation
    • Bug fixes

@Leila011 Leila011 marked this pull request as ready for review August 8, 2024 08:07
@Leila011 Leila011 requested a review from dorien-er August 8, 2024 08:07
issue_tracker: https://github.com/NBISweden/AGAT/issues
repository: https://github.com/NBISweden/AGAT
references:
doi: 10.5281/zenodo.3552717
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@dorien-er dorien-er Aug 23, 2024

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Suggested change
doi: 10.5281/zenodo.3552717
doi: https://doi.org/10.5281/zenodo.3552717

name: agat_sp_ensembl_output_style
namespace: agat
description: |
This script takes a normal gff3 annotation format file and convert it to
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Suggested change
This script takes a normal gff3 annotation format file and convert it to
This script takes a normal gff3 annotation format file and converts it to

namespace: agat
description: |
This script takes a normal gff3 annotation format file and convert it to
gff3 like ensembl format.
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Suggested change
gff3 like ensembl format.
gff3-like ensembl format.

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3 participants