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Bedtools genomecov #128

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wants to merge 17 commits into from
Closed

Bedtools genomecov #128

wants to merge 17 commits into from

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tgaspe
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@tgaspe tgaspe commented Aug 7, 2024

Description

New component bedtools_genomecov

Issue ticket number

Closes #xxxx

Checklist before requesting a review

  • I have performed a self-review of my code

  • Conforms to the Contributing guidelines

  • Proposed changes are described in the CHANGELOG.md

  • I have tested my code with viash ns test --parallel -q <name or namespace>

  • Check the correct box. Does this PR contain:

    • Breaking changes
    • New functionality
    • Major changes
    • Minor changes
    • Documentation
    • Bug fixes

src/bedtools/bedtools_genomecov/script.sh Outdated Show resolved Hide resolved
src/bedtools/bedtools_genomecov/script.sh Show resolved Hide resolved
src/bedtools/bedtools_genomecov/test.sh Outdated Show resolved Hide resolved
src/bedtools/bedtools_genomecov/config.vsh.yaml Outdated Show resolved Hide resolved
@tgaspe tgaspe requested a review from DriesSchaumont August 20, 2024 18:01
@tverbeiren tverbeiren self-requested a review September 6, 2024 14:47
@tverbeiren tverbeiren mentioned this pull request Sep 6, 2024
tverbeiren added a commit that referenced this pull request Sep 6, 2024
* Initial commit

* Update config.vsh.yaml

* Update script.sh

* update on test.sh

* bug fixing

* adding ibam option tests

* depthzero and strand option tests

* 5prime and max tests

* more tests

* Changelog

* Update config.vsh.yaml

* Update config.vsh.yaml

* Update script.sh

* Update test.sh

* TMPDIR

* Unset Variables

* par_trackopts multiple: true

* Minor update to CHANGELOG

---------

Co-authored-by: tgaspe <[email protected]>
@tverbeiren tverbeiren closed this Sep 6, 2024
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3 participants