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Add agat convert sp gff2tsv #115

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updaet config: add keywords, add requirement update description of --…
…config
Leila011 committed Aug 19, 2024

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commit 1a6fa683fa5e5e9de27ad9c9aff25bf76ca05ec7
6 changes: 4 additions & 2 deletions src/agat/agat_convert_sp_gff2tsv/config.vsh.yaml
Original file line number Diff line number Diff line change
@@ -3,7 +3,7 @@ namespace: agat
description: |
The script aims to convert gtf/gff file into tabulated file. Attribute's
tags from the 9th column become column titles.
keywords: [gene annotations, GFF conversion]
keywords: [gene annotations, GFF conversion, TSV]
links:
homepage: https://github.com/NBISweden/AGAT
documentation: https://agat.readthedocs.io/en/latest/tools/agat_convert_sp_gff2tsv.html
@@ -12,6 +12,8 @@ links:
references:
doi: 10.5281/zenodo.3552717
license: GPL-3.0
requirements:
- commands: [agat]
authors:
- __merge__: /src/_authors/leila_paquay.yaml
roles: [ author, maintainer ]
@@ -39,7 +41,7 @@ argument_groups:
- name: --config
alternatives: [-c]
description: |
AGAT config file. By default AGAT takes the original agat_config.yaml shipped with AGAT. The `--config` option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
AGAT config file. By default AGAT takes the original agat_config.yaml shipped with AGAT. The `--config` option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
type: file
required: false
example: custom_agat_config.yaml