small changes

viash-hub · Aug 28, 2024 · e4fc5d6 · e4fc5d6
1 parent 2069a14
commit e4fc5d6
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Showing 4 changed files with 6 additions and 69 deletions.
diff --git a/src/bcftools/bcftools_annotate/config.vsh.yaml b/src/bcftools/bcftools_annotate/config.vsh.yaml
@@ -1,7 +1,7 @@
 name: bcftools_annotate
 namespace: bcftools
 description: | 
-  
+  Add or remove annotations from a VCF/BCF file.
 keywords: [Annotate, VCF, BCF]
 links:
   homepage: https://samtools.github.io/bcftools/
@@ -24,7 +24,7 @@ argument_groups:
         alternatives: -i
         type: file
         multiple: true
-        description: Input VCF/BCF file. Maximum of two files.
+        description: Input VCF/BCF file.
         required: true
 
   - name: Outputs
@@ -114,7 +114,7 @@ argument_groups:
         type: string
         description: | 
           When multiple regions overlap a single record, this option defines how to treat multiple annotation values.
-          See https://samtools.github.io/bcftools/bcftools.html#annotate for more details.
+          See man page for more details.
 
       - name: --mark_sites
         alternatives: --m
@@ -125,7 +125,7 @@ argument_groups:
       - name: --min_overlap
         type: string
         description: | 
-          minimum overlap required as a fraction of the variant in the annotation -a file (ANN), 
+          Minimum overlap required as a fraction of the variant in the annotation -a file (ANN), 
           in the target VCF file (:VCF), or both for reciprocal overlap (ANN:VCF). 
           By default overlaps of arbitrary length are sufficient. 
           The option can be used only with the tab-delimited annotation -a file and with BEG and END columns present.

diff --git a/src/bcftools/bcftools_annotate/script.sh b/src/bcftools/bcftools_annotate/script.sh
@@ -49,4 +49,6 @@ bcftools annotate \
     ${par_remove:+-x "$par_remove"} \
     -o $par_output \
     $par_input
+
+
 
diff --git a/src/bcftools/bcftools_annotate/test_data/example.vcf b/src/bcftools/bcftools_annotate/test_data/example.vcf
diff --git a/src/bcftools/bcftools_annotate/test_data/output.vcf b/src/bcftools/bcftools_annotate/test_data/output.vcf
Original file line number	Diff line number	Diff line change
Expand Up		@@ -49,4 +49,6 @@ bcftools annotate \
		${par_remove:+-x "$par_remove"} \
		-o $par_output \
		$par_input