add arriba test data script

viash-hub · Jan 26, 2024 · d0461db · d0461db
1 parent 57e506f
commit d0461db
Show file tree

Hide file tree

Showing 2 changed files with 10 additions and 13 deletions.
diff --git a/src/arriba/test_data/README.md b/src/arriba/test_data/README.md
diff --git a/src/arriba/test_data/script.sh b/src/arriba/test_data/script.sh
@@ -0,0 +1,10 @@
+# arriba test data
+
+# Test data was obtained from https://github.com/snakemake/snakemake-wrappers/tree/master/bio/arriba/test
+
+if [ ! -d /tmp/snakemake-wrappers ]; then
+  git clone --depth 1 --single-branch --branch master https://github.com/snakemake/snakemake-wrappers /tmp/snakemake-wrappers
+fi
+
+cp -r /tmp/snakemake-wrappers/bio/arriba/test/* src/arriba/test_data
+