fix bug

viash-hub · Aug 20, 2024 · 998854c · 998854c
1 parent d2fba99
commit 998854c
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/src/agat/agat_sp_extract_attributes/config.vsh.yaml b/src/agat/agat_sp_extract_attributes/config.vsh.yaml
@@ -43,9 +43,8 @@ argument_groups:
     arguments:       
       - name: --output
         alternatives: [-o, --out, --outfile]
-        description: Output GFF file.
-        type: file
-        direction: output
+        description: Output GFF file. One file per attribute tag will be created using the attribute tag name as file name suffix.
+        type: string
         required: true
         example: output.txt
   - name: Arguments

diff --git a/src/agat/agat_sp_extract_attributes/script.sh b/src/agat/agat_sp_extract_attributes/script.sh
@@ -13,7 +13,7 @@ set -eo pipefail
 agat_sp_extract_attributes.pl \
   --gff "$par_gff" \
   --attribute "$par_attribute" \
-  -output "$par_output" \
+  --output "$par_output" \
   ${par_primary_tag:+-p "${par_primary_tag}"} \
   ${par_merge:+--merge} \
   ${par_dot:+-d} \