Add star_align_reads component (#22)

* add star align component * refactor script * refactor variables and script * ensure zcat and bzcat are also installed * change utf8 into ascii * clean up quotes * fix renamed argument * better utf8 to ascii conversion * update format to viash 0.9 * add star version to docker * add TODOs * add newline * wip check contents of star output * remove test data * rename component * remove todo * remove starsolo params * Apply suggestions from code review Co-authored-by: Dries Schaumont <[email protected]> * add missing slash --------- Co-authored-by: Dries Schaumont <[email protected]>
viash-hub · Feb 27, 2024 · 8acef30 · 8acef30
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -27,6 +27,8 @@
 
 * `lofreq/indelqual`: Insert indel qualities into BAM file (PR #17).
 
+* `star/star_align_reads`: Align reads to a reference genome (PR #22).
+
 ## MAJOR CHANGES
 
 ## MINOR CHANGES