Skip to content

Commit

Permalink
PR fixes
Browse files Browse the repository at this point in the history
  • Loading branch information
jakubmajercik committed Nov 8, 2024
1 parent 5288f3f commit 852f11b
Showing 1 changed file with 1 addition and 2 deletions.
3 changes: 1 addition & 2 deletions src/agat/agat_convert_minimap2_bam2gff/config.vsh.yaml
Original file line number Diff line number Diff line change
@@ -1,11 +1,10 @@
name: agat_convert_minimap2_bam2gff
namespace: agat
description: |
The script converts output from minimap2 (bam or sam) into gff file. To
Convert output from minimap2 (bam or sam) into gff file. To
get bam from minimap2 use the following command: `minimap2 -ax splice:hq
genome.fa Asecodes_parviclava.nucest.fa | samtools sort -O BAM -o
output.bam`.
To use bam with this script you will need samtools in your path.
keywords: [gene annotations, GFF conversion, minimap2]
links:
homepage: https://github.com/NBISweden/AGAT
Expand Down

0 comments on commit 852f11b

Please sign in to comment.