WIP add indelqual test

src/lofreq/indelqual/test.sh

@@ -0,0 +1,33 @@
+#!/bin/bash
+
+set -e
+
+dir_in="${meta_resources_dir%/}/test_data"
+
+echo "> Run lofreq indelqual uniform"
+"$meta_executable" \
+  --input "$dir_in/a.bam" \
+  -u 15 \
+  --out "uniform.bam" \
+
+echo ">> Checking output"
+[ ! -f "out.bam" ] && echo "Output file out.bam does not exist" && exit 1
+
+echo ">> Check if output is empty"
+[ ! -s "out.bam" ] && echo "Output file out.bam is empty" && exit 1
+
+echo "> run lofreq indelqual dindel"
+"$meta_executable" \
+  --input "$dir_in/a.bam" \
+  --ref "$dir_in/hg38_chr21.fa" \
+  --dindel \
+  --out "dindel.bam"
+
+echo ">> Checking output"
+[ ! -f "dindel.bam" ] && echo "Output file dindel.bam does not exist" && exit 1
+
+echo ">> Check if output is empty"
+[ ! -s "dindel.bam" ] && echo "Output file dindel.bam is empty" && exit 1
+
+
+echo "> Test successful"