Skip to content

Commit

Permalink
BUG: cutadapt base quality cutoff arguments have the wrong type
Browse files Browse the repository at this point in the history
  • Loading branch information
DriesSchaumont authored Jun 25, 2024
1 parent 3481750 commit 7e60bb5
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions src/cutadapt/config.vsh.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -269,7 +269,7 @@ argument_groups:
dark cycles appearing as high-quality G bases.
- name: --quality_cutoff
alternatives: [-q]
type: string
type: integer
description: |
Trim low-quality bases from 5' and/or 3' ends of each read
before adapter removal. Applied to both reads if data is
Expand All @@ -278,7 +278,7 @@ argument_groups:
trimmed with the first cutoff, the 3' end with the second.
- name: --quality_cutoff_r2
alternatives: [-Q]
type: string
type: integer
description: |
Quality-trimming cutoff for R2. Default: same as for R1
- name: --quality_base
Expand Down

0 comments on commit 7e60bb5

Please sign in to comment.