change platforms into engines and runners

viash-hub · Feb 24, 2024 · 4a3f614 · 4a3f614
1 parent 0793da3
commit 4a3f614
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Showing 4 changed files with 12 additions and 5 deletions.
diff --git a/src/busco/busco_download_datasets/config.vsh.yaml b/src/busco/busco_download_datasets/config.vsh.yaml
@@ -35,11 +35,13 @@ resources:
 test_resources:
   - type: bash_script
     path: test.sh
-platforms:
+engines:
   - type: docker
     image: quay.io/biocontainers/busco:5.6.1--pyhdfd78af_0
     setup:
       - type: docker
         run: |
           busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_versions.txt
+runners:
+  - type: executable
   - type: nextflow
diff --git a/src/busco/busco_list_datasets/config.vsh.yaml b/src/busco/busco_list_datasets/config.vsh.yaml
@@ -27,11 +27,13 @@ resources:
 test_resources:
   - type: bash_script
     path: test.sh
-platforms:
+engines:
   - type: docker
     image: quay.io/biocontainers/busco:5.6.1--pyhdfd78af_0
     setup:
       - type: docker
         run: |
           busco --version | sed 's/BUSCO\s\(.*\)/busco: "\1"/' > /var/software_versions.txt
+runners:
+  - type: executable
   - type: nextflow
diff --git a/src/lofreq/call/config.vsh.yaml b/src/lofreq/call/config.vsh.yaml
@@ -237,13 +237,14 @@ test_resources:
     path: test.sh
   - type: file
     path: test_data
-platforms:
+engines:
   - type: docker
     image: quay.io/biocontainers/lofreq:2.1.5--py38h794fc9e_10
     setup:
       - type: docker
         run: |
           version=$(lofreq version | grep 'version' | sed 's/version: //') && \
           echo "lofreq: $version" > /var/software_versions.txt
+runners:
+  - type: executable
   - type: nextflow
-
diff --git a/src/lofreq/indelqual/config.vsh.yaml b/src/lofreq/indelqual/config.vsh.yaml
@@ -69,12 +69,14 @@ test_resources:
     path: test.sh
   - type: file
     path: test_data
-platforms:
+engines:
   - type: docker
     image: quay.io/biocontainers/lofreq:2.1.5--py38h794fc9e_10
     setup:
       - type: docker
         run: |
           version=$(lofreq version | grep 'version' | sed 's/version: //') && \
           echo "lofreq: $version" > /var/software_versions.txt
+runners:
+  - type: executable
   - type: nextflow