convert par_type to comma separated list

viash-hub · Aug 19, 2024 · 4819514 · 4819514
1 parent 7a22888
commit 4819514
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/src/agat/agat_sp_filter_feature_from_kill_list/script.sh b/src/agat/agat_sp_filter_feature_from_kill_list/script.sh
@@ -6,6 +6,9 @@
 # unset flags
 [[ "$par_verbose" == "false" ]] && unset par_verbose
 
+# convert par_type to comma separated list
+par_type=$(echo $par_type | tr ';' ',').
+
 # run agat_sp_filter_feature_from_kill_list
 agat_sp_filter_feature_from_kill_list.pl \
   --gff "$par_gff" \