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update test
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dorien-er committed Jan 30, 2024
1 parent 8e1700d commit 41c0926
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions src/busco/busco/test.sh
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
test_dir="$meta_resources_dir/test_data"

echo "> Running busco"
echo "> Running busco with lineage dataset"

"$meta_executable" \
--input $test_dir/protein.fasta \
Expand All @@ -20,11 +20,12 @@ echo ">> Checking if output is empty"
[ ! -s "output/short_summary.json" ] && echo "short_summary.json is empty" && exit 1
[ ! -s "output/short_summary.txt" ] && echo "short_summary.txt is empty" && exit 1

echo "> Running busco with auto lineage"

"$meta_executable" \
--input $test_dir/protein.fasta \
--mode proteins \
--auto_lineage \
--auto_lineage_euk \
--output_dir output

echo ">> Checking output"
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