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Update src/featurecounts/config.vsh.yaml
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Co-authored-by: Robrecht Cannoodt <[email protected]>
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sainirmayi and rcannood authored Jan 31, 2024
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3 changes: 3 additions & 0 deletions src/featurecounts/config.vsh.yaml
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Expand Up @@ -91,11 +91,14 @@ functionality:
Specify attribute type in GTF annotation. 'gene_id' by default. Meta-features used for read counting will be extracted from annotation using the provided value.
default: "gene_id"
required: false

- name: --extra_attributes
type: string
description: |
Extract extra attribute types from the provided GTF annotation and include them in the counting output. These attribute types will not be used to group features. If more than one attribute type is provided they should be separated by comma.
required: false
multiple: true
multiple_sep: ","
- name: --chrom_alias
alternatives: ["-A"]
type: file
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