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viash-hub / biobox Public

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Fork 6
Star 4

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Issues 4
Pull requests 19
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Component Testing

FEAT + BUG: cutadapt; allowing disabling demultiplexing and fix par_q… #630

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FEAT + BUG: cutadapt; allowing disabling demultiplexing and fix par_q…

FEAT + BUG: cutadapt; allowing disabling demultiplexing and fix par_q… #630

Summary
Jobs
- run_ci_check_job
  
  list
  
  viash_test (salmon_quant, salmon, src/salmon/salmon_quant/config.vsh.yaml, src/salmon/salmon_quant/)
  
  viash_test (salmon_index, salmon, src/salmon/salmon_index/config.vsh.yaml, src/salmon/salmon_index/)
  
  viash_test (lofreq_indelqual, lofreq, src/lofreq/indelqual/config.vsh.yaml, src/lofreq/indelqual/)
  
  viash_test (lofreq_call, lofreq, src/lofreq/call/config.vsh.yaml, src/lofreq/call/)
  
  viash_test (busco_download_datasets, busco, src/busco/busco_download_datasets/config.vsh.yaml, sr...
  
  viash_test (busco_list_datasets, busco, src/busco/busco_list_datasets/config.vsh.yaml, src/busco/...
  
  viash_test (busco_run, busco, src/busco/busco_run/config.vsh.yaml, src/busco/busco_run/)
  
  viash_test (bcl_convert, src/bcl_convert/config.vsh.yaml, src/bcl_convert/)
  
  viash_test (fastp, src/fastp/config.vsh.yaml, src/fastp/)
  
  viash_test (cutadapt, src/cutadapt/config.vsh.yaml, src/cutadapt/)
  
  viash_test (featurecounts, src/featurecounts/config.vsh.yaml, src/featurecounts/)
  
  viash_test (multiqc, src/multiqc/config.vsh.yaml, src/multiqc/)
  
  viash_test (arriba, src/arriba/config.vsh.yaml, src/arriba/)
  
  viash_test (gffread, src/gffread/config.vsh.yaml, src/gffread/)
  
  viash_test (falco, src/falco/config.vsh.yaml, src/falco/)
  
  viash_test (pear, src/pear/config.vsh.yaml, src/pear/)
  
  viash_test (star_align_reads, star, src/star/star_align_reads/config.vsh.yaml, src/star/star_alig...
  
  viash_test (star_genome_generate, star, src/star/star_genome_generate/config.vsh.yaml, src/star/s...
  
  viash_test (samtools_idxstats, samtools, src/samtools/samtools_idxstats/config.vsh.yaml, src/samt...
  
  viash_test (samtools_sort, samtools, src/samtools/samtools_sort/config.vsh.yaml, src/samtools/sam...
  
  viash_test (samtools_faidx, samtools, src/samtools/samtools_faidx/config.vsh.yaml, src/samtools/s...
  
  viash_test (samtools_stats, samtools, src/samtools/samtools_stats/config.vsh.yaml, src/samtools/s...
  
  viash_test (samtools_view, samtools, src/samtools/samtools_view/config.vsh.yaml, src/samtools/sam...
  
  viash_test (samtools_collate, samtools, src/samtools/samtools_collate/config.vsh.yaml, src/samtoo...
  
  viash_test (samtools_flagstat, samtools, src/samtools/samtools_flagstat/config.vsh.yaml, src/samt...
  
  viash_test (samtools_index, samtools, src/samtools/samtools_index/config.vsh.yaml, src/samtools/s...
  
  viash_test (samtools_fastq, samtools, src/samtools/samtools_fastq/config.vsh.yaml, src/samtools/s...
  
  viash_test (bedtools_getfasta, bedtools, src/bedtools/bedtools_getfasta/config.vsh.yaml, src/bedt...
Run details
- Usage
- Workflow file

Usage Workflow file

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