Skip to content
Component Testing

Output alignments to the transcriptome (#56) #601

Sign in to view logs

Output alignments to the transcriptome (#56)

Output alignments to the transcriptome (#56) #601

Run time

Learn about OS pricing on GitHub Actions
Job Run time
test / run_ci_check_job
2s
test / list
44s
test / viash_test (salmon_quant, salmon, src/salmon/salmon_quant/config.vsh.yaml, src/salmon/salmon_quant/)
57s
test / viash_test (salmon_index, salmon, src/salmon/salmon_index/config.vsh.yaml, src/salmon/salmon_index/)
43s
test / viash_test (lofreq_indelqual, lofreq, src/lofreq/indelqual/config.vsh.yaml, src/lofreq/indelqual/)
4m 27s
test / viash_test (lofreq_call, lofreq, src/lofreq/call/config.vsh.yaml, src/lofreq/call/)
1m 59s
test / viash_test (busco_download_datasets, busco, src/busco/busco_download_datasets/config.vsh.yaml, sr...
1m 19s
test / viash_test (busco_list_datasets, busco, src/busco/busco_list_datasets/config.vsh.yaml, src/busco/...
1m 44s
test / viash_test (busco_run, busco, src/busco/busco_run/config.vsh.yaml, src/busco/busco_run/)
6m 23s
test / viash_test (bcl_convert, src/bcl_convert/config.vsh.yaml, src/bcl_convert/)
2m 25s
test / viash_test (fastp, src/fastp/config.vsh.yaml, src/fastp/)
41s
test / viash_test (cutadapt, src/cutadapt/config.vsh.yaml, src/cutadapt/)
1m 19s
test / viash_test (featurecounts, src/featurecounts/config.vsh.yaml, src/featurecounts/)
35s
test / viash_test (multiqc, src/multiqc/config.vsh.yaml, src/multiqc/)
3m 10s
test / viash_test (arriba, src/arriba/config.vsh.yaml, src/arriba/)
1m 22s
test / viash_test (gffread, src/gffread/config.vsh.yaml, src/gffread/)
47s
test / viash_test (falco, src/falco/config.vsh.yaml, src/falco/)
1m 8s
test / viash_test (pear, src/pear/config.vsh.yaml, src/pear/)
2m 10s
test / viash_test (star_align_reads, star, src/star/star_align_reads/config.vsh.yaml, src/star/star_alig...
5m 16s
test / viash_test (star_genome_generate, star, src/star/star_genome_generate/config.vsh.yaml, src/star/s...
7m 32s
test / viash_test (samtools_idxstats, samtools, src/samtools/samtools_idxstats/config.vsh.yaml, src/samt...
2m 10s
test / viash_test (samtools_sort, samtools, src/samtools/samtools_sort/config.vsh.yaml, src/samtools/sam...
1m 0s
test / viash_test (samtools_faidx, samtools, src/samtools/samtools_faidx/config.vsh.yaml, src/samtools/s...
1m 40s
test / viash_test (samtools_stats, samtools, src/samtools/samtools_stats/config.vsh.yaml, src/samtools/s...
2m 5s
test / viash_test (samtools_view, samtools, src/samtools/samtools_view/config.vsh.yaml, src/samtools/sam...
3m 28s
test / viash_test (samtools_collate, samtools, src/samtools/samtools_collate/config.vsh.yaml, src/samtoo...
39s
test / viash_test (samtools_flagstat, samtools, src/samtools/samtools_flagstat/config.vsh.yaml, src/samt...
33s
test / viash_test (samtools_index, samtools, src/samtools/samtools_index/config.vsh.yaml, src/samtools/s...
42s
test / viash_test (samtools_fastq, samtools, src/samtools/samtools_fastq/config.vsh.yaml, src/samtools/s...
40s
test / viash_test (bedtools_getfasta, bedtools, src/bedtools/bedtools_getfasta/config.vsh.yaml, src/bedt...
1m 4s
58m 44s